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View Structure Prediction Details

Protein: col-14
Organism: Caenorhabditis elegans
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-14.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
297.0 [0..31] [324..1413]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEKEKRSL RPVAFVAVVF STVAITSCLI TFPLILHYIQ TLESQVQLDL EFCQARARDM  60
   61 WKEMLDIETG GKKDSAKLAN IVLNHRRLEK RDTLQDFWAR RLHDQELRDQ PVGYDNPSVG 120
  121 VESFNSEGGG CCTCHRGPPG PAGDGGRDGA DGVDGTPGEI GPPGPPAPPG PDPHSLFPPQ 180
  181 CPCEAPPGDG GPPGQPGPDG PPGAPGNAGE DGKPGDQGPR GPPGIPGAPG QPGRPGPPGE 240
  241 PGTYKTEVGP AGRAGAPGRP GPPGQPGPAG PPGENGKGGG QGPSGLPGPP GQPGQNGAPG 300
  301 EVGQPGDNGA PGSCDHCPPA RLAPGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.0
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle