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View Structure Prediction Details

Protein: CE08751
Organism: Caenorhabditis elegans
Length: 497 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08751.

Description E-value Query
Range
Subject
Range
gi|76622246 - gi|76622246|ref|XP_617648.2| PREDICTED: similar to protein tyrosine phosphatase, receptor type, sigm...
384.0 [0..78] [470..1322]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVDQAPKK KSHERKRKEK RVHTGNGTAK KHHKRKSRSK SKNKPKNGLS CCRKKKKKSK  60
   61 KSKSKVTKKQ PKKKVIKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-497]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAPVPNEQLG EVVLVKNVKL PETPQKPEND TPVKDGLKPP RTTNSVEKIN LSKESFNLSN  60
   61 EKIASDNGTE EKMEKKNVDS PADIQDGLKG KSKQKSEEKV HQKAKDDAKR GDECNKFKIS 120
  121 DEKLTKWKLV AQETLKDDAN IAVNEFEKVS GYLPPHISKN HFVSNMDKNR FVDVICMDHS 180
  181 RVKLTDSSYI HANWVDLNSS KKAILTQLPL SHTASDFWQM IIDQKIKCVL LIMTDGEFNK 240
  241 FGGNSVFPQN QDFLKFEDRF IRVGEFKQVE LGKGWNLKVL SVSNGTYKTF IHVHHYKNWP 300
  301 HGSIPSDVKQ IWQVQSYLRK YTDGHPPVYM SMSGCGRAGT FALFETAHMS LHNEQPSLNM 360
  361 VKCLENVRNG RLHSVQNLSQ FSVVYTLIAE HVLGNGIGKK DVEEQENSID NILRQLTIQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle