YRC Public Data Repository - Protein Structure Prediction

Protein:	acbp-1
Organism:	Caenorhabditis elegans
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acbp-1.

Description	E-value	Query Range	Subject Range
gi\|73949054 - gi\|73949054\|ref\|XP_848899.1\| PREDICTED: similar to Acyl-CoA-binding protein (ACBP) (Diazepam binding...	129.0	[0..1]	[85..213]
gi\|148707856, gi... - gi\|83921595\|ref\|NP_001033088.1\| diazepam binding inhibitor isoform 1 [Mus musculus], gi\|67511482\|emb...	127.0	[0..1]	[85..50]
gi\|37654308, gi\|... - gi\|37654308\|gb\|AAQ96259.1\| LRRGT00046 [Rattus norvegicus], gi\|109498524\|ref\|XP_001054001.1\| PREDICTE...	126.0	[0..2]	[86..102]
gi\|67511480, gi\|... - gi\|67511480\|emb\|CAJ00736.1\| diazepam binding inhibitor, splice form 1c [Homo sapiens], gi\|120433593\|...	124.0	[0..3]	[85..5]
gi\|73746605 - gi\|73746605\|gb\|AAZ82211.1\| diazepam-binding protein [Nomascus gabriellae]	124.0	[0..2]	[85..20]
gi\|114580585 - gi\|114580585\|ref\|XP_515759.2\| PREDICTED: diazepam binding inhibitor isoform 3 [Pan troglodytes] DBI - diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein)	124.0	[0..2]	[85..3]
gi\|113549007, gi... - gi\|50901174\|ref\|XP_463020.1\| putative Acyl-CoA-binding protein [Oryza sativa (japonica cultivar-grou...	123.0	[0..1]	[86..3]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSFDDAAA TVKTLKTSPS NDELLKLYAL FKQGTVGDNT TDKPGMFDLK GKAKWSAWDE  60
   61 KKGLAKDDAQ KAYVALVEEL IAKYGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.09691
Match:	2cb8A
Description:	No description for 2cb8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits