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View Structure Prediction Details

Protein: mus-81
Organism: Caenorhabditis elegans
Length: 445 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mus-81.

Description E-value Query
Range
Subject
Range
MUS81 - MUS81 endonuclease homolog (S. cerevisiae)
330.0 [0..15] [443..16]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQSKRVTV RIEHSKNTFF EKVLKFQHQE QEDRKLKYVL HKAHENLRKC PFEILTIVDL  60
   61 KNVQGIGENI ALKLEETWNV ACRENNGQDP TLRSIKKFTT DDYRRFLTNR KSTTERMKDA 120
  121 KRLEKQKSTK TIVDIENEFE SDGDDDKQPS VPLTKTKSFQ VSKPVQPSLI RSQSGNLSSS 180
  181 SSTSSSSSNS SDPLSFRLLT CR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 1bpdA
Description: CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [203-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFEQPTVYLI ADNREHRNNP RFKSVIEHLV KKEDIRVDIR SLSVGDYIWI CRKIDGTEIV  60
   61 MDWVVERKTW DDLQSSIRGG RYDEQKGRLN MAPMKNRVYL IEAQHKGDVA CEQAVASTLS 120
  121 NGGYLIQRCS DTRDTAAFLK EVTIRLQNKA AIEEISGVPF SQLQNLLQKK KAETVKEAWV 180
  181 RQLMVCPGMS QNRAEAIADR FPSMVSLLSY FRANGDDAPI RLLQLLPQLT RPITRNLFKF 240
  241 FVQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.221849
Match: 2bgwA
Description: XPF from Aeropyrum pernix, complex with DNA
Matching Structure (courtesy of the PDB):

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