YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7497139
Organism:	Caenorhabditis elegans
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7497139.

Description	E-value	Query Range	Subject Range
gi\|77416939 - gi\|77416939\|gb\|ABA81865.1\| unknown [Solanum tuberosum]	119.0	[0..1]	[72..1]
gi\|68397381 - gi\|68397381\|ref\|XP_686604.1\| PREDICTED: similar to 60S acidic ribosomal protein P2 [Danio rerio]	118.0	[0..1]	[136..158]
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	116.0	[0..1]	[136..1]
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	115.0	[0..1]	[136..1]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1	114.0	[0..1]	[136..2]
gi\|52353712, gi\|... - gi\|52353712\|gb\|AAU44278.1\| putative 60S acidic ribosomal protein [Oryza sativa Japonica Group], gi\|2... gi\|125552521 - gi\|125552521\|gb\|EAY98230.1\| hypothetical protein OsI_019463 [Oryza sativa (indica cultivar-group)]	111.0	[0..1]	[136..1]
gi\|110765226, gi... - ref\|XP_392860.1\| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi\|110765226\|ref\|XP_00...	111.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYLGAYLLA TLGGNASPSA QDVLKVLEAG GLDCDMENAN SVVDALKGKT ISEVIAQGKV  60
   61 KLSSVPSGGS APAAAAPSGG AAPKGKFCFT NYDPHLKIIH CGARFKISKQ YRWPEEKKKE 120
  121 EPKEESDDDM GFGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.017729
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits