| Protein: | CE08610 |
| Organism: | Caenorhabditis elegans |
| Length: | 315 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08610.
| Description | E-value | Query Range |
Subject Range |
|
|
245.0 | [0..11] | [311..1181] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MDPYQQGGRG GGFPARGGRG GGHGGGYPQE GYGAAAGGYG GYDPYNPYGA AGGYGMYPGQ 60
61 GYPPQEMTSP LDAEIQAVLR EIHLEVTGLE TSGDQFRNAR RLLNSEKERL ENNI
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [115-249] |
1 11 21 31 41 51
| | | | | |
1 DPEWLEVDVA KPVKVCKKIL VPIYRHPNFN FIGKVLGPKG ATLQTLCKTH KCHIYILGRG 60
61 STKDREKEAE LLASGDPQHA HFSGPLHVKV ETVAPAYIAY GRVAAVIEEL SRILQPIHED 120
121 TTPAHLKNGS GDGEE
|
| Detection Method: | |
| Confidence: | 43.39794 |
| Match: | 2bl5A |
| Description: | Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.766407798661875 | bayes_pls_golite062009 |
| nucleic acid binding | 0.1608635436815 | bayes_pls_golite062009 |
| RNA binding | 0.0205643208063799 | bayes_pls_golite062009 |
|
Region A: Residues: [250-315] |
1 11 21 31 41 51
| | | | | |
1 KEDEEKKEGG EGGGRGGRGG RGGFRGGFRG GRGGFGGPGG PMGGRGGMGG MGGRGRGGQA 60
61 AGFRPY
|
| Detection Method: | |
| Confidence: | 1.06 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
