YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE08553
Organism: Caenorhabditis elegans
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08553.

Description E-value Query
Range
Subject
Range
fbxb-37 - status:Predicted UniProt:P91449 protein_id:AAB37877.1
195.0 [0..146] [443..1]

Back

Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCDVLKDTG SKLVIFDDGA QNSLNQDSTK IACVKNDCIL NGKQVEEICI SESPPKTTTT  60
   61 PAPVPTTTTT EPSGASQLAA LSSGLLILEE ASPCPRSRVA HPTCSIDLTS FSPSPLCLKL 120
  121 FSLPFAPSAH LTGPFISHYP HYSPNMD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [148-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVSFPILRLP QPALKNALRQ MFLVEHISLS VLSAKAKQQV AKLNEIRGNI YLFVSSSMVG  60
   61 FNLRSKWIHF DLSVDLDKST IEIRKHEAPR YELTNLSMPG FTAKQWIDHI GCVFLKNGNL 120
  121 TLLVQNPQRR MIEERYEYIR EFRIVKLEIY SAEIQESPLY DMFPL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [313-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKCLSFGPFP RHQSILIQNA DKFIFNESKF TLNEILLCNC SSISVDNQVT SDKDLNRFMK  60
   61 HWIKGSNHRL ELFQYHCRPN NR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.677781
Match: PF07735.8
Description: No description for PF07735.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [395-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALIVESELFK GIDYKVEQMD RYWKQFEIER NDGTKAMIAF GENGFVSFIM CVSPLVLLDV  60
   61 PNFNFFY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle