YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08529
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08529.

Description	E-value	Query Range	Subject Range
gi\|76614517 - gi\|76614517\|ref\|XP_604303.2\| PREDICTED: similar to Smad nuclear interacting protein [Bos taurus]	136.0	[0..6]	[285..175]
gi\|187029839, gi... - gi\|39586252\|emb\|CAE66663.1\| Hypothetical protein CBG12001 [Caenorhabditis briggsae], gi\|187029839\|em...	134.0	[0..1]	[299..1]
gi\|73976968 - gi\|73976968\|ref\|XP_532557.2\| PREDICTED: similar to Smad nuclear interacting protein [Canis familiari...	132.0	[0..6]	[285..185]
SNIP1_RAT - Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1 PE=1 SV=1	129.0	[0..17]	[285..88]
Y8013_DICDI - Probable serine/threonine-protein kinase DDB_G0280133 OS=Dictyostelium discoideum GN=DDB_G0280133 PE... gi\|60469299, gi\|... - gi\|66814164\|ref\|XP_641261.1\| protein serine/threonine kinase [Dictyostelium discoideum AX4], gi\|6046...	128.0	[0..6]	[276..1197]
gi\|50759748 - gi\|50759748\|ref\|XP_417763.1\| PREDICTED: similar to Smad nuclear interacting protein [Gallus gallus]	127.0	[0..4]	[286..98]
SNIP1_MOUSE - Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1 SV=1	126.0	[0..17]	[285..84]
gi\|109002111 - gi\|109002111\|ref\|XP_001111700.1\| PREDICTED: similar to Smad nuclear interacting protein [Macaca mula...	123.0	[0..6]	[285..81]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRDSPRDRR HRDRSPERRR RSRSRSRDRQ TRRDTRRDDS PKIKREVKEE QFSDNDSPRR  60
   61 RRDDRGGRRD DRRDNRRDDR RDHRDDRGDR DRRDNFRRPD PVREDGKQYG LEKKEENWGK 120
  121 PEEPAKEKEK VNLGTSGALT EDTNTFRGVV IKYNEP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEAKKPNARW RLYPFKGEES LQVLYIHRQS AYLIGRDHKI ADIPVDHPSC SKQHAVLQFR  60
   61 SMPFTRDDGT KARRIMPYII DLGSGNGTFL NEKKIEPQRY IELQEKDMLK FGFSTREYVV 120
  121 MKEREITEEE LAEGEDVKKE ESD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	2jpeA
Description:	No description for 2jpeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits