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View Structure Prediction Details

Protein: CE08354
Organism: Caenorhabditis elegans
Length: 663 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08354.

Description E-value Query
Range
Subject
Range
gi|39586311, gi|... - gi|39586311|emb|CAE66722.1| Hypothetical protein CBG12068 [Caenorhabditis briggsae], gi|187029898|em...
510.0 [0..24] [662..2]

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Predicted Domain #1
Region A:
Residues: [1-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFQKSVYFNS LLSSLGISAI FEIKAAANKQ FANQLVIQVP VNSFKNGKKI KGVGSAFRET  60
   61 KHFSSTTTMH GPKRIFYGKG VARAFWMLIV GLALAMLCFQ IFILLQMYFS KPTLSQVSFI 120
  121 VNEGGMDFPA VTVCNFNPIK KSYVRELNVS GDLTGETLEY LLQTNMDAMF LFSNLDRHNL 180
  181 KETHDEAETY FQNHTDFQII KFLRTAGYDC GEIFDCCKYM KQKVTSLGKC WELDLRNLAP 240
  241 EWMRKQISPG SEAGLQIVVD AQLEEELKGE NDDAKAIFSD IYENGFRYFI HPPGTNAQLT 300
  301 SEGISVSPSR TVYSAIKTVT HNLLNRGNWG NCSENWPEGY NTFLSYSASA CRALCIAQFF 360
  361 NDTCGCAPFT YNVDGRKKIC APYESITCMD NHMLKKVNGT DYLELPDCEE CHMECQSTSY 420
  421 TSYNSYGDGF NRGSLEWLKK ISNKSETHIK NNVAVINIFF LEMFYTSYSQ VQATSLTEIL 480
  481 SDIGGNMGMF LGMSVITITE LSLFFSKIFW IMVSKRRRQY MYSKKTHE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #2
Region A:
Residues: [529-663]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEKEHQLDEA VKEFQERRSR RNSRENISAL GHYSNRITPV DDFQTKFGYK NAFSEGNMSN  60
   61 SSLDSVMELK FDINELRRQL NQPSTDGIAR IRLPHQTSRQ NSTENYYSSS PPIFTIEPMS 120
  121 RKQSKTSLPS SLSPR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle