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View Structure Prediction Details

Protein: CE08241
Organism: Caenorhabditis elegans
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08241.

Description E-value Query
Range
Subject
Range
gi|54644141, gi|... - gi|54644141|gb|EAL32883.1| GA21851-PA [Drosophila pseudoobscura], gi|125984119|ref|XP_001355824.1| G...
255.0 [0..20] [340..16]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIVLQKFKT RCFIFSQQLL SKRHGFDRID RIALLAVFVV ALINYISFPE RRKFQIPAEL  60
   61 YAYSPAILPY KEFFFPTRDV QILIQGIEHS PAT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [94-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTLPTSGQIF CFVETSTKYY KDRVPSVAST WLPRCDHGRF FTKTHLPYPD IAYSTVYRNL  60
   61 RDTYDDLFRK SIFSLYYSYT SISKHFDWYL KTDDDTFVAM DHLREYLNTL NPAEPLYLGY 120
  121 RLAPFMNNGY NSGGSGYILS NAAMRMFVEQ LYHNVRLCPY DRGEDRGMGR CLESVGITPS 180
  181 DTRDDQELNR FMPFRPAEIP IIGSKWHYFP LKYPFISKKF VTLHRVPPEM MISLDKSLYS 240
  241 ENGEPTFNVT DFFNY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.39794
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle