YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08185
Organism:	Caenorhabditis elegans
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08185.

Description	E-value	Query Range	Subject Range
gi\|73959879 - gi\|73959879\|ref\|XP_854405.1\| PREDICTED: similar to DNA-directed RNA polymerases III 12.5 kDa polypep...	128.0	[0..10]	[117..26]
gi\|18893037, gi\|... - gi\|18977358\|ref\|NP_578715.1\| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus DSM 3638], g...	126.0	[0..12]	[118..4]
gi\|46438863, gi\|... - gi\|68477862\|ref\|XP_717083.1\| hypothetical protein CaO19.12820 [Candida albicans SC5314], gi\|68477699... orf19.12820, orf... - RPC11 CGDID:CAL0004345 Assembly 19, Contig19-10225 (127260, 127595) CDS, translated using codon tabl...	126.0	[0..10]	[118..2]
gi\|88182107, gi\|... - gi\|88182107\|gb\|EAQ89575.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	125.0	[0..10]	[118..3]
gi\|21956651 - gi\|21956651\|gb\|AAM83406.1\| POLR3K [Sphoeroides nephelus]	124.0	[0..10]	[117..2]
gi\|5458798, gi\|7... - pir\|\|H75048 DNA-directed RNA polymerase (EC 2.7.7.6) chain M PAB1464 - Pyrococcus abyssi (strain Ors... gi\|5458798, gi\|1... - gi\|5458798\|emb\|CAB50285.1\| tfs archaeal transcription factor S [Pyrococcus abyssi GE5], gi\|14521579\|...	124.0	[0..12]	[118..4]
gi\|50797497 - gi\|50797497\|ref\|XP_423952.1\| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti...	123.0	[0..10]	[117..92]
gi\|47220062 - gi\|47220062\|emb\|CAG12210.1\| unnamed protein product [Tetraodon nigroviridis]	123.0	[0..10]	[117..2]
gi\|12862220 - gi\|12862220\|dbj\|BAB32384.1\| unnamed protein product [Mus musculus]	123.0	[0..10]	[117..2]
gi\|50424117, gi\|... - gi\|50424117\|ref\|XP_460643.1\| hypothetical protein DEHA0F07216g [Debaryomyces hansenii CBS767], gi\|49...	122.0	[0..10]	[118..2]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNFLSYDD DFCGYCGAIL ELPAQAPATV SCKVCSTRWA VKERVDQVVS RVEKIYERTV  60
   61 ADTDGIENDE SADAVVDHIC TKCGHSKASY STMQTRSADE GQTVFYTCLK CKKKDIEYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits