YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08102
Organism:	Caenorhabditis elegans
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08102.

Description	E-value	Query Range	Subject Range
gi\|110801587, gi... - gi\|110801587\|ref\|YP_698192.1\| glutathione peroxidase [Clostridium perfringens SM101], gi\|110682088\|g...	168.0	[0..39]	[221..1]
gi\|18309893, gi\|... - gi\|18309893\|ref\|NP_561827.1\| glutathione peroxidase [Clostridium perfringens str. 13], gi\|18144571\|d... gi\|169346931, gi... - gi\|169346931\|ref\|ZP_02865879.1\| glutathione peroxidase [Clostridium perfringens C str. JGS1495], gi\|... gi\|177909775, gi... - gi\|182624978\|ref\|ZP_02952756.1\| glutathione peroxidase [Clostridium perfringens D str. JGS1721], gi\|... gi\|170663489, gi... - gi\|170663489\|gb\|EDT16172.1\| glutathione peroxidase [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|170716055, gi... - gi\|170716055\|gb\|EDT28237.1\| glutathione peroxidase [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168216219, gi... - gi\|182381756\|gb\|EDT79235.1\| glutathione peroxidase [Clostridium perfringens NCTC 8239], gi\|168216219...	168.0	[0..39]	[220..1]
gi\|56420320, gi\|... - gi\|56420320\|ref\|YP_147638.1\| glutathione peroxidase [Geobacillus kaustophilus HTA426], gi\|56380162\|d...	167.0	[0..39]	[219..1]
gi\|187026711, gi... - gi\|39596153\|emb\|CAE69790.1\| Hypothetical protein CBG16081 [Caenorhabditis briggsae], gi\|187026711\|em... gi\|157767530 - gi\|157767530\|ref\|XP_001667245.1\| Hypothetical protein CBG16081 [Caenorhabditis briggsae AF16]	167.0	[0..22]	[224..21]
gi\|110674820, gi... - gi\|110800173\|ref\|YP_695353.1\| glutathione peroxidase [Clostridium perfringens ATCC 13124], gi\|110674...	167.0	[0..39]	[219..1]
gi\|15894827, gi\|... - gi\|15894827\|ref\|NP_348176.1\| glutathione peroxidase [Clostridium acetobutylicum ATCC 824], gi\|150245... gi\|25285641 - pir\|\|A97091 glutathione peroxidase [imported] - Clostridium acetobutylicum	165.0	[0..39]	[219..1]
GPX4 - glutathione peroxidase 4 (phospholipid hydroperoxidase) GPX4_PONPY - Phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor - Pongo pygmaeus (Orangut...	164.0	[0..3]	[215..11]
GPX4_CEBAP - Phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor - Cebus apella (Brown-cap...	164.0	[0..3]	[215..11]
GX41_MOUSE, GPX4... - (O70325) Phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor (EC 1.11.1.12) (...	163.0	[0..3]	[215..11]
GPX4_MACFU - Phospholipid hydroperoxide glutathione peroxidase, mitochondrial precursor - Macaca fuscata fuscata ...	163.0	[0..3]	[215..11]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGSVLSLA VALATIIGIS CTATVDETMR WKECLNTNQS IFDFQIETLQ GEYTDLSQYR  60
   61 GKVILLVNVA TFCAYTQQYT DFNPMLEKYQ AQGLTLVAFP CNQFYLQEPA ENHELMNGLT 120
  121 YVRPGNGWTP HQELHIYGKI DVNGDNHHPL YEFVKESCPQ TVDKIGKTDE LMYNPVRPSD 180
  181 ITWNFEKFLI DRNGQPRFRF HPTAWSHGDV VTPFIEQLLA EPAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2i3yA
Description:	No description for 2i3yA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits