YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08101
Organism:	Caenorhabditis elegans
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08101.

Description	E-value	Query Range	Subject Range
CE08102 - glutathione peroxidase status:Confirmed UniProt:Q95003 protein_id:CAB02655.1	188.0	[0..6]	[223..7]
gi\|187026711, gi... - gi\|39596153\|emb\|CAE69790.1\| Hypothetical protein CBG16081 [Caenorhabditis briggsae], gi\|187026711\|em... gi\|157767530 - gi\|157767530\|ref\|XP_001667245.1\| Hypothetical protein CBG16081 [Caenorhabditis briggsae AF16]	183.0	[0..1]	[223..1]
gi\|110801587, gi... - gi\|110801587\|ref\|YP_698192.1\| glutathione peroxidase [Clostridium perfringens SM101], gi\|110682088\|g...	182.0	[0..38]	[220..1]
gi\|18309893, gi\|... - gi\|18309893\|ref\|NP_561827.1\| glutathione peroxidase [Clostridium perfringens str. 13], gi\|18144571\|d... gi\|169346931, gi... - gi\|169346931\|ref\|ZP_02865879.1\| glutathione peroxidase [Clostridium perfringens C str. JGS1495], gi\|... gi\|177909775, gi... - gi\|182624978\|ref\|ZP_02952756.1\| glutathione peroxidase [Clostridium perfringens D str. JGS1721], gi\|... gi\|170663489, gi... - gi\|170663489\|gb\|EDT16172.1\| glutathione peroxidase [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|170716055, gi... - gi\|170716055\|gb\|EDT28237.1\| glutathione peroxidase [Clostridium perfringens CPE str. F4969], gi\|1682... gi\|168216219, gi... - gi\|182381756\|gb\|EDT79235.1\| glutathione peroxidase [Clostridium perfringens NCTC 8239], gi\|168216219...	181.0	[0..38]	[219..1]
gi\|110674820, gi... - gi\|110800173\|ref\|YP_695353.1\| glutathione peroxidase [Clostridium perfringens ATCC 13124], gi\|110674...	179.0	[0..38]	[218..1]
gi\|56420320, gi\|... - gi\|56420320\|ref\|YP_147638.1\| glutathione peroxidase [Geobacillus kaustophilus HTA426], gi\|56380162\|d...	178.0	[0..38]	[218..1]
gi\|208966382, gi... - gi\|90995409\|gb\|AAI11376.1\| GPX5 protein [synthetic construct], gi\|208966382\|dbj\|BAG73205.1\| glutathi... GPX5 - glutathione peroxidase 5 (epididymal androgen-related protein)	178.0	[0..1]	[220..1]
gi\|109070150, gi... - gi\|226531183\|ref\|NP_001152774.1\| glutathione peroxidase 5 precursor [Macaca mulatta], gi\|109070150\|r... GPX5_MACFA - Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1	177.0	[0..1]	[220..1]
gi\|56238574 - gi\|56238574\|emb\|CAI25889.1\| glutathione peroxidase 5 (epididymal androgen-related protein) [Mus musc...	175.0	[0..1]	[220..17]
gi\|109505943 - gi\|109505943\|ref\|XP_001059839.1\| PREDICTED: similar to Epididymal secretory glutathione peroxidase p...	175.0	[0..1]	[220..17]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWQLTFAA LFAFVAAQPG PKMVDETTRW SQCKDTNQSI YDFQVETLQG EYTDLSQYRG  60
   61 QVLLMVNVAT FCAYTQQYTD FNPLIEKYQS QGFTLIAFPC NQFYLQEPAE NHELMNGIMY 120
  121 VRPGNGWKPH QNLHIYGKLD TNGDNQHPIY EFVKESCPQT VDKIGKTDEL MYNPIRASDI 180
  181 TWNFEKFLID RNGQPRFRFH PTAWSHGDVV TPFIEQLLAE PAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.39794
Match:	2r37A
Description:	No description for 2r37A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits