YRC Public Data Repository - Protein Structure Prediction

Protein:	tin-9.1
Organism:	Caenorhabditis elegans
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tin-9.1.

Description	E-value	Query Range	Subject Range
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	101.0	[0..1]	[83..126]
gi\|71004396, gi\|... - gi\|71004396\|ref\|XP_756864.1\| hypothetical protein UM00717.1 [Ustilago maydis 521], ref\|XP_398332.1\| ...	98.0	[0..1]	[89..81]
T10B_RAT - Mitochondrial import inner membrane translocase subunit Tim10 B OS=Rattus norvegicus GN=Timm10b PE=3...	96.0	[0..3]	[83..4]
T10B_BOVIN - Mitochondrial import inner membrane translocase subunit Tim10 B OS=Bos taurus GN=TIMM10B PE=3 SV=1	94.0	[0..8]	[83..15]
T10B_PONAB - Mitochondrial import inner membrane translocase subunit Tim10 B OS=Pongo abelii GN=TIMM10B PE=3 SV=1 TIM9B_PONPY - Mitochondrial import inner membrane translocase subunit Tim9 B - Pongo pygmaeus (Orangutan)	92.0	[0..8]	[83..11]
gi\|114635930 - gi\|114635930\|ref\|XP_001165925.1\| PREDICTED: similar to small zinc finger-like protein isoform 2 [Pan...	92.0	[0..8]	[83..12]
gi\|115969099, gi... - gi\|115969099\|ref\|XP_001188197.1\| PREDICTED: similar to small zinc finger-like protein [Strongylocent...	92.0	[0..9]	[76..384]
FXC1 - fracture callus 1 homolog (rat)	92.0	[0..8]	[83..12]
T10B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim10 B OS=Mus musculus GN=Timm10b PE=1 SV=1	92.0	[0..8]	[83..9]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSEQNIQTF RDFLTQYNLV AEQCFNSCVN EFGSRTVSGK EESCANNCLD KFLKMTQRVS  60
   61 QRFQEHQLLN AQANGAAIKV ENGGKINKIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.154902
Match:	2bskA
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits