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View Structure Prediction Details

Protein: erm-1
Organism: Caenorhabditis elegans
Length: 563 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erm-1.

Description E-value Query
Range
Subject
Range
gi|114640250 - gi|114640250|ref|XP_522176.2| PREDICTED: radixin [Pan troglodytes]
406.0 [0..5] [563..186]

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Predicted Domain #1
Region A:
Residues: [1-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKAINVRV TSMDSELEFA IQSSTTGKQL FDQVVKTIGL REIWYFGLQY TDNKGFPTWL  60
   61 KLNKKVLSQD VKKDPTLVFK FRAKFYPEDV AEEIIQDVTM RLFYLQVKDG ILSDEIYCPP 120
  121 ETSVLLASYA MQAKYGDYVP ETHVAGCLTA DRLLPQRVLG QFKLNSEEWE RRIMTWWADH 180
  181 RATTREQAML EYLKIAQDLE MYGVNYFEIR NKKGTDLYLG VDALGLNIYD KADRLSPKVG 240
  241 FPWSEIRNIS FNDKKFVIKP IDKKAHDFVF YAPRLRINKR ILALCMGNHE LYMRRRKPDT 300
  301 IEVQQMKQQA REDRALKIAE QEKLTREMSA REEAEQRQRD AEKRMAQMQE DMERARLELA 360
  361 EAHNTIHSLE AQLKQLQLAK QALEQKEYEL RELTAQLQSE KAMSDGERRH LRDQVDARER 420
  421 EVFSMREEVE RQTTVTRQLQ TQIHSQQHTQ HYSNSHHVSN GHAHDETATD DEDNGATELT 480
  481 NDADQNVPQH ELERVTAAEK NIQIKNKLDM LTRELDSVKD QNAVTDYDVL HMENKKAGRD 540
  541 KYKTLRQIRG GNTKRRIDQY ENM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.0
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle