YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07717
Organism:	Caenorhabditis elegans
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07717.

Description	E-value	Query Range	Subject Range
gi\|55244234, gi\|... - gi\|58379439\|ref\|XP_309921.2\| ENSANGP00000015075 [Anopheles gambiae str. PEST], gi\|55244234\|gb\|EAA056...	155.0	[0..7]	[181..45]
KLHDB_AEDAE - Kelch-like protein diablo OS=Aedes aegypti GN=dbo PE=3 SV=1	155.0	[0..7]	[181..42]
gi\|109467069, gi... - gi\|62643982\|ref\|XP_578033.1\| PREDICTED: similar to TD and POZ domain containing 2 [Rattus norvegicus...	155.0	[0..6]	[176..188]
KLHDB_DROYA - Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 KLHDB_DROSE - Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 dbo-PA - The gene diablo is referred to in FlyBase by the symbol Dmel\dbo (CG6224, FBgn0040230). It is a prot...	153.0	[0..7]	[181..73]
gi\|54642184, gi\|... - gi\|54642184\|gb\|EAL30933.1\| GA19454-PA [Drosophila pseudoobscura], gi\|125978783\|ref\|XP_001353424.1\| G...	153.0	[0..7]	[181..75]
gi\|4650844 - gi\|4650844\|dbj\|BAA77027.1\| Kelch motif containing protein [Homo sapiens]	153.0	[0..7]	[181..69]
gi\|73960608 - gi\|73960608\|ref\|XP_861800.1\| PREDICTED: similar to kelch-like 20 isoform 5 [Canis familiaris] gi\|119611360 - gi\|119611360\|gb\|EAW90954.1\| kelch-like 20 (Drosophila), isoform CRA_c [Homo sapiens]	153.0	[0..7]	[181..69]
KLH20_PONAB - Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3 gi\|55731256 - gi\|55731256\|emb\|CAH92342.1\| hypothetical protein [Pongo abelii]	153.0	[0..7]	[181..69]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSESIVKL NVGGTVFVTL KSTLTKHHGI FKALVKTEMP AEDGDSFFID RSPKHFETVL  60
   61 NYIRSGDVDL PDSENELKEL KREAEYYSLE KLATLCQSSM PK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	2i2rA
Description:	No description for 2i2rA was found.

Predicted Domain #2

Region A:
Residues: [103-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKSYKTADEL LNMIANTKKV VVVIHYLAYK NQLHTIPLGF KFSEFVERNK DKAEVFIYEI  60
   61 KDEEELKDKP YVDDPNRVWS FCIFNSEWSE NYPLKSLRDI QVQLDCFGDF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.546	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.406	d.44.1	Fe,Mn superoxide dismutase (SOD), C-terminal domain
View	Download	0.358	d.44.1	Fe,Mn superoxide dismutase (SOD), C-terminal domain
View	Download	0.340	d.168.1	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
View	Download	0.322	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits