YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07716
Organism:	Caenorhabditis elegans
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07716.

Description	E-value	Query Range	Subject Range
gi\|50759261 - gi\|50759261\|ref\|XP_417591.1\| PREDICTED: similar to actinfilin [Gallus gallus]	170.0	[0..5]	[204..41]
gi\|68402224, gi\|... - gi\|68402224\|ref\|XP_697683.1\| PREDICTED: similar to actinfilin [Danio rerio], gi\|189535997\|ref\|XP_697...	168.0	[0..5]	[204..42]
gi\|4650844 - gi\|4650844\|dbj\|BAA77027.1\| Kelch motif containing protein [Homo sapiens]	168.0	[0..5]	[202..69]
gi\|60360602 - gi\|60360602\|dbj\|BAD90319.1\| mKIAA4210 protein [Mus musculus]	168.0	[0..5]	[202..107]
KLH20_XENLA - Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1	168.0	[0..5]	[202..64]
gi\|66524471 - gi\|66524471\|ref\|XP_397065.2\| PREDICTED: similar to diablo CG6224-PA isoform 1 [Apis mellifera]	167.0	[0..5]	[202..80]
gi\|114565496 - gi\|114565496\|ref\|XP_001149345.1\| PREDICTED: similar to mKIAA4210 protein isoform 1 [Pan troglodytes]	167.0	[0..5]	[202..144]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNTVKLNV GGTVFETLKS TLTKHDGFFK ALIETDVPAE KDDSNCFFID RSPKHFETVL  60
   61 NYMRSGDVVL PDSKKDMLEL KKEAEYYLLS NLAKLCQPPT DNFKTCTPEE LMRVVANTDK 120
  121 KVIMINYLTY NGELVFYPWG FNLVHFLIQN RDYVEDVYFR RTESQYPEDG PFPNEKPYWT 180
  181 FLVYNSTRSG RRPFRHTVDL EDCMGHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits