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View Structure Prediction Details

Protein: CE07621
Organism: Caenorhabditis elegans
Length: 522 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07621.

Description E-value Query
Range
Subject
Range
gi|115937013, gi... - gi|115937013|ref|XP_001183100.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...
541.0 [0..2] [473..12]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFSSLVHN VRGQLIARII SFAINMYLLR RINNDVLGLV NVRLTLLYSS ILFLTREPLR  60
   61 KAEIIRGSLP KFINLLWLSP IISTVISVVC VYLWYAFSST SDEVSWSVLL SFPISAIIES 120
  121 IAEPFSVISL RLESKCGSLA QHFAIGQGML ICVKRIFVLA GLFMFPGMYH LELFAYAQYI 180
  181 GAIAYLLFNF VAFYIYIRNK SIPELEQFST FSDLFP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [217-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFSEGIDRDS IHAVFTMFSH SILKQLLTDG SAYVMTFTEL LSLKDQAVYD AVERVGSIIV  60
   61 RTILSPIDEN CNAYFSNTIR KESSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [302-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNKNTDNHDD LVDTLSKVLH VVGVIGFVAC TFGIPYSPVV ISLYGGKLLS ENGGALLLSL  60
   61 YSGYILVTAI NGITEGFAMA SMDNRQIFTH GKFLFVTSII HLIINYVLCV YMNSAGFIVA 120
  121 NIINMSVRII YNWRTIREYL GDKCPSFTEV LPTGQTSIFL GVSLLATSFT YLLFATTPGL 180
  181 SYTLAHIAIG AVCLILTAQD TAQHDSVFTV IVDSLAKKHR D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle