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View Structure Prediction Details

Protein: col-43
Organism: Caenorhabditis elegans
Length: 303 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-43.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
258.0 [0..49] [301..1392]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSDGRTKA YKFVAYAAVS FSIVAVLSVV LTLPMVYNYV SHVRQQMNHE LSFCKGSAKD  60
   61 IFAEVNFMKT HSGPAAPGNR TARQSGYGQP EVNPSANLQC EGCCLPGPPG PAGVPGKPGK 120
  121 PGRPGAPGQP GVPGKPPTAP CEPTTPPPCK PCPQGPPGPP GPPGAPGDPG EAGTPGRPGT 180
  181 DATPGLPGPR GPPGPPGEAG QPGPQGDAGT PAQSEPLTPG APGEAGDAGP AGPPGPPGAP 240
  241 GNDGPPGPPG PKGSPGPDGP AGVDGQAGPP GPPGQAGTPG EKGICPKYCA LDGGVFFEDG 300
  301 TRR

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Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle