YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07608
Organism:	Caenorhabditis elegans
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07608.

Description	E-value	Query Range	Subject Range
gi\|157759866 - gi\|157759866\|ref\|XP_001672275.1\| Hypothetical protein CBG11378 [Caenorhabditis briggsae AF16] gi\|39590409, gi\|... - gi\|39590409\|emb\|CAE66148.1\| Hypothetical protein CBG11378 [Caenorhabditis briggsae], gi\|187030368\|em...	267.0	[0..1]	[284..1]
gi\|20387087, gi\|... - gi\|20387087\|dbj\|BAB91244.1\| LBP (LPS binding protein)/BPI (bactericidal/permeability-increasing prot...	267.0	[0..3]	[269..221]
gi\|28173296 - gi\|28173296\|dbj\|BAC56095.1\| bactericidal permeability-increasing protein/lipopolysaccharide-binding ...	260.0	[0..3]	[269..221]
gi\|50758891 - gi\|50758891\|ref\|XP_417465.1\| PREDICTED: similar to Bactericidal permeability-increasing protein prec...	257.0	[0..3]	[269..363]
gi\|27155085 - gi\|27155085\|gb\|AAH40955.1\| Bactericidal/permeability-increasing protein [Homo sapiens]	257.0	[0..3]	[269..236]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVDNRMITQ PLITMDYIET NHQGEIHFES LSETTPFFPR LMEQMYREPL SDHMAHFYVS  60
   61 DHLLNSMLYQ AYQDNRLALK IDESNLPNEM KSFVSTQCPT KKHQTYVCVG YLIPEIRHLY 120
  121 PDSTVSFAIL PHGLPYVMFN RDGMTVDIKN RILTYAIPDD PAHLNNRSQI LVFSINGQAD 180
  181 ITFAPTTESL NAHMNLNRFN VRLHRSAVRG IDESSIARLS PLSKTFIAPR LSSAVEKAVR 240
  241 FPMQDTIKFI NPVIKNYDGF ICLSTDFQLE KQKIEAIVRK SIEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	1bp1A
Description:	CRYSTAL STRUCTURE OF BPI, THE HUMAN BACTERICIDAL PERMEABILITY-INCREASING PROTEIN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits