YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07600
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07600.

Description	E-value	Query Range	Subject Range
gi\|114690659 - gi\|114690659\|ref\|XP_001144896.1\| PREDICTED: opsin 1 (cone pigments), long-wave-sensitive (color blin...	206.0	[0..3]	[287..131]
gi\|73953906 - gi\|73953906\|ref\|XP_853735.1\| PREDICTED: similar to Opsin-4 (Melanopsin) [Canis familiaris]	205.0	[0..15]	[294..73]
gi\|10121075, gi\|... - gi\|10121076\|pdb\|1F88\|B Chain B, Crystal Structure Of Bovine Rhodopsin, gi\|10121075\|pdb\|1F88\|A Chain ...	202.0	[0..6]	[298..2]
gi\|16588405 - gi\|16588405\|gb\|AAL26791.1\|AF310191_1 inferred ancient archosaur visual pigment [synthetic construct]	201.0	[0..6]	[298..2]
gi\|5931796 - gi\|5931796\|emb\|CAB56646.1\| rod opsin [Anguilla japonica]	200.0	[0..6]	[298..2]
OPSD_RABIT - Rhodopsin OS=Oryctolagus cuniculus GN=RHO PE=1 SV=1	200.0	[0..6]	[298..2]
OPSD_CALPD - Rhodopsin OS=Caluromys philander GN=RHO PE=1 SV=1	200.0	[0..6]	[298..2]
gi\|4836679 - gi\|4836679\|gb\|AAD30519.1\| rhodopsin [Latimeria chalumnae]	199.0	[0..6]	[287..2]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASELNCTQL LNQWPDPETG DAKDLVISQF INTVVLSYRP FHYFILACVV IFAFFANILI  60
   61 LIVLSRKEMR YSGVNVTMML ISICDLVCAI AGLIQLYLRN FSVTYTSYIK AYTQLTVDYF 120
  121 QISFHAASLY LALGMAFCRV VAMSSRTDSR YTWQSPKYSL RIALLLCIPV FIFGSHNVLL 180
  181 NHVEIENGTI VLNISPLSLA NSCLFLKLAI FLNGLFFKIV PCILMMVLSF VILARMKSGK 240
  241 KASNTNSGNH IDAQIVRSSR FIQAVIVVFV ITEAPQGVLS LLGGLSINDY IKCCDTFLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits