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View Structure Prediction Details

Protein: CE07547
Organism: Caenorhabditis elegans
Length: 708 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07547.

Description E-value Query
Range
Subject
Range
gi|39581325, gi|... - gi|39581325|emb|CAE71534.1| Hypothetical protein CBG18472 [Caenorhabditis briggsae], gi|187024939|em...
gi|157758721 - gi|157758721|ref|XP_001671704.1| Hypothetical protein CBG18472 [Caenorhabditis briggsae AF16]
755.0 [0..1] [708..1]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHDDSHIL SQLGILDSHE RSPKRETTSS VAEKKFVDVK LTASMSDDDE DDDEDLVFDR  60
   61 NNLLSSNKRQ NASLIRGRAD NQTIRLLILL LLFLIAGLVS SSTTLSVCSV RHEVIACLWT 120
  121 CIGMFCGAWS TKLTSARSNL MLFLLSALLT LLVNLFLAFN FAFLFAVRGF FVGATLYGGA 180
  181 LIWFAFW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [188-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKQLRKFLIL LLFFSAGGLL AMTLKTTAFN DATNSLADMS IVSRSIQNTV SRLKRASDDE  60
   61 KTLLPFVAAV IDNSTQAANV TDDSIVKKPE VATGTVQKLK TKTEINVEKE KEVEEKKKDS 120
  121 ESELVQVIDG S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [319-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGNSTGSTVE TTPSTSTTTT SSTTSTTTTT TTTTETPSTT VITTTIPSTT SEPEATIDVK  60
   61 TRDSKEDTNG VLPTSSAIET PPYPENCPED SLFLPGTIAA SEETSSSFIK TFASFGVVIY 120
  121 IVSYALCCLP CGLRPDAKVK KLESDSVVGL GMRLRIFVAT IQTIIGFVQQ IKHFHSSAQP 180
  181 SAF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [502-708]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEHIVICVFV MIMSFILVFA GHRVGTIESV ISSFLLTAFG ELILLFSSTS QFGNITSICG  60
   61 LYALWISLFF VVELFLQVRC TVQLAYFLIA WIVGRAMACL FALEPIFNGL EQTFTFILTI 120
  121 CIGVLLFNAI RMLQKSKRLK EILDNSSTPI GGSGINSATG EYISLTAQDV LDDDDLLDED 180
  181 EMDRSSMDLD FELEQLGLEP VGVGSRA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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