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View Structure Prediction Details

Protein: gck-1
Organism: Caenorhabditis elegans
Length: 653 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gck-1.

Description E-value Query
Range
Subject
Range
gck-1 - status:Partially_confirmed UniProt:Q6ABW4 protein_id:AAT81184.1
420.0 [0..23] [653..8]

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Predicted Domain #1
Region A:
Residues: [1-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTSSDELP RQADDDSMKW DRIYIQKLDP EVIFTKQERI GRGSFGEVYK GIDNRTGRVV  60
   61 AIKIIDLEQA EDEIEDIQQE IQVLSQCDSQ YVTKYFGSFL KGSKLWIIME YLGGGSALDL 120
  121 TKSGKLDESH IAVILREILK GLEYLHSERK IHRDIKAANV LVSEHGDVKV ADFGVAGQLT 180
  181 ETVKKRITFV GSPFWMAPEL IKQSSYDYKA DIWSLGITAI ELANGEPPHS DLHPMRVLFL 240
  241 IPKNPPPVLQ GSQWSKPFKE FVEMCLNKDP ENRPSASTLL KHQFIKRAKK NSILVDLIER 300
  301 AAEYRLRTGV SSDSDLDEDS DGGGGTSKWD YPTVRGP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.522879
Match: 1f3mC
Description: pak1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [338-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVSADDDGTV RQRTDRPRAQ VDRRSPSGSP GGTIVRGSPQ VAAVAEQLRN SSVGSSGYGS  60
   61 GGNSASSQYA TSSLPQSHTA SSGGATTITL GSPNGSPTSS LARTQSMVSP SGQRSGSAQS 120
  121 WELERGNRPM SERVSSQVSP SKYNQHRTSS SNGVQGGSGG RREYINGSGS GLNGNSSNQN 180
  181 HSEYSDAVRQ RGPG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [532-653]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGGRLDYRE SHVPTSSQEN LNHGRMYGYG APPPSREANN VPMPRVKGAL DCSLLPAIEH  60
   61 LSRTRHATAA LDQLRHVFRD VEDSCPGICN ELIEELMQRI AVPQVSQSDL DAAIRRLTTP 120
  121 PS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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