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View Structure Prediction Details

Protein: CE07418
Organism: Caenorhabditis elegans
Length: 188 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07418.

Description E-value Query
Range
Subject
Range
gi|79160090, gi|... - gi|79160090|gb|AAI07895.1| NME1-NME2 protein [Homo sapiens], gi|119614969|gb|EAW94563.1| hCG2001850,...
223.0 [0..14] [154..141]
gi|109114364 - gi|109114364|ref|XP_001096144.1| PREDICTED: similar to non-metastatic cells 1, protein (NM23A) expre...
221.0 [0..9] [154..83]
gi|61372303, gi|... - gi|61372303|gb|AAX43820.1| non-metastatic cells 2 [synthetic construct], gi|61372297|gb|AAX43819.1| ...
220.0 [0..14] [154..1]
NDKB_RAT - Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1
219.0 [0..14] [154..1]
NDKB_PONAB - Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1
NDKB_PONPY - Nucleoside diphosphate kinase B - Pongo pygmaeus (Orangutan)
219.0 [0..14] [154..1]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRSEVSKPQ LENPNLVDRI IVIILPNYFY EYESVLKHIT KENFGIIEKT VKHFKTEEVM  60
   61 EWKSADLESQ DIWNLSDRLI DGPCMLLLCQ RANAFIEMKE VAKYHNVIAK RMSSSDGIYY 120
  121 SKTTIAAYHD IIFFFPKYID ERAMLKHAKD YLSVEVWPKL SQGLARVAVE RPDNPIKWLA 180
  181 DYLHQLRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.69897
Match: 1nueA
Description: Nucleoside diphosphate kinases
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleobase, nucleoside, nucleotide kinase activity 3.35981009046932 bayes_pls_golite062009
nucleoside diphosphate kinase activity 3.25178488081583 bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor 3.00995437354018 bayes_pls_golite062009
kinase activity 1.58348632049803 bayes_pls_golite062009
catalytic activity 1.54275558650196 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.10074088410853 bayes_pls_golite062009
transferase activity 1.01095942675678 bayes_pls_golite062009
binding 0.8707688422879 bayes_pls_golite062009
protein binding 0.136008742581077 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle