YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ipla-1
Organism: Caenorhabditis elegans
Length: 765 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ipla-1.

Description E-value Query
Range
Subject
Range
gi|109083639 - gi|109083639|ref|XP_001083968.1| PREDICTED: similar to DDHD domain containing 1 isoform 3 [Macaca mu...
705.0 [0..23] [763..118]

Back

Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSPPTSPT PIPSIDSNFM ISPKKSRSKS VPNARKILND LVETTERNLE APYRSIMWQK  60
   61 YIFDRPKVTE L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KCSEVRWFFQ EPKGTLWNPF NGRDSIMLEI KYRKEKGIEL DEAMQEIYDE SLTHYKMEMK  60
   61 DEPEIENGNI GMEQEKPMVV VMNGQYKVNK DNSKIDPIYW KDDSKEIRRG SWFSPDYQPL 120
  121 EMPLSDQIEK NHLQCFRNQM IPEGTTVFSK SETSNKPVLA ELHVDGYDIR WSSVIDISLH 180
  181 QKGNAILRYL WAKSTPLRRG YEKEADWN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-572]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAAAEISHLI LVVHGIGQKG YENLIAQNAN QVRDGVVSAM EKVYPEEKSR PMFLPVEWRS  60
   61 ALKLDNGLTD NITIPKMSSM RASLNSTAMD VMYYQSPLFR TEIVRGVVSQ LNRTYKLFKA 120
  121 NNPQFNGHVS VFGHSLGSVI CYDVLTQYSP LMLFDKYVTK SIDEYLKRDD TNASEEARKA 180
  181 LEAMKLAREQ LRDNLEGGIH KLLVTKEEQL EFKVKYLFAV GSPLGVFLTM RGGESTDLLS 240
  241 KATNVERVFN IFHPYDPVAY RLEPFFAPEY RHIRPIKLFS NTDLRARASY ENL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.0
Match: 1ku0A
Description: Lipase L1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [573-627]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLDVYKHYLK KLKNLNKAKK NKDDKTADAR SGGDDENEDE DECDSDEDAR SGCSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [628-765]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRSMTPPPFE TAAANAAAAA KETKAVKKGW FSFGTSSNPK KTQSTASLGS VNATSTENIE  60
   61 FAKEAAEELP LAEKILGSGV RVPHRIDFQL QPALTEKSYW SVLKSHFAYW TNADLALFLA 120
  121 NVLYCKPLKP EEAKPTWA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle