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View Structure Prediction Details

Protein: gi|7505947
Organism: Caenorhabditis elegans
Length: 217 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7505947.

Description E-value Query
Range
Subject
Range
gi|6995994 - gi|6995994|ref|NP_037359.1| aggrecan 1 isoform 2 precursor [Homo sapiens]
175.0 [0..3] [215..1767]
gi|11276915, gi|... - gi|37953322|gb|AAP44492.1| aggrecan [Bos taurus], gi|27806761|ref|NP_776406.1| aggrecan [Bos taurus]...
166.0 [0..4] [216..1720]
gi|57047785 - gi|57047785|ref|XP_536187.1| PREDICTED: similar to Aggrecan core protein precursor (Cartilage-specif...
163.0 [0..4] [215..1682]
gi|109082372 - gi|109082372|ref|XP_001091462.1| PREDICTED: aggrecan 1 [Macaca mulatta]
155.0 [0..3] [215..980]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLAKMGLTT KGLTTKGLTT NFLEFSRRFW NIPEFSQIFQ KVLEHSRIFS NFPEGSGTFQ  60
   61 HFLKFSRRFW NIPEFSQIFQ KVLEHSRIF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [90-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDFPEGSGTF QNFLKFSRRF WNIPEFSRIF QKVLEHSSIF SNFPEGSGTF QNFLKFSRRF  60
   61 WNIPEFSRIF QKVLEHSRIF SNFPEGSGTF QNFLGFSRRF WNIPEFSRIF QKVLEHSGIF 120
  121 SKFPISVQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle