YRC Public Data Repository - Protein Structure Prediction

Protein:	egl-46
Organism:	Caenorhabditis elegans
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egl-46.

Description	E-value	Query Range	Subject Range
gi\|73947291 - gi\|73947291\|ref\|XP_541354.2\| PREDICTED: similar to Zinc finger protein 606 (Zinc finger protein 328)...	335.0	[0..4]	[285..2505]
gi\|114626840 - gi\|114626840\|ref\|XP_528435.2\| PREDICTED: zinc finger protein 79 (pT7) [Pan troglodytes]	319.0	[0..4]	[285..401]
gi\|76644053 - gi\|76644053\|ref\|XP_592867.2\| PREDICTED: similar to zinc finger protein 287 [Bos taurus]	303.0	[0..4]	[285..734]
gi\|109080060 - gi\|109080060\|ref\|XP_001102824.1\| PREDICTED: similar to zinc finger protein 354C [Macaca mulatta]	296.0	[0..4]	[285..217]
gi\|2224593 - gi\|2224593\|dbj\|BAA20784.1\| KIAA0326 [Homo sapiens]	293.0	[0..2]	[285..247]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPMNDFWVK AILSSTNPSP VPSTTSTVSN DENLDKTLDF DCSTQTVFPT LPMFWNPTLV  60
   61 QQMLALYQIQ QQQIQFSAKL APQPLFQEPT IQKEFLPFPH QSRKRPLPID PKKTKLRKLN 120
  121 EDTVTSSPVS GMFIKEEADV KSVEELQKEA DLLDETAAYV EVTEESRQKI DEIPNVIGDC 180
  181 ICRLCKVKYE DVFKLAQHKC PRIAHEEYKC PDCDKVFSCP ANLASHRRWH KPRNELGGSP 240
  241 PAQSSTIVSC STCFNSFPTK KMLKLHSSTC QRSPLQDLLS RVIPTM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	2i13A
Description:	No description for 2i13A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits