YRC Public Data Repository - Protein Structure Prediction

Protein:	dnj-15
Organism:	Caenorhabditis elegans
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dnj-15.

Description	E-value	Query Range	Subject Range
gi\|62089432 - gi\|62089432\|dbj\|BAD93160.1\| DnaJ (Hsp40) homolog, subfamily A, member 3 variant [Homo sapiens]	119.0	[0..2]	[139..106]
gi\|61363502 - gi\|61363502\|gb\|AAX42402.1\| DnaJ-like subfamily A member 3 [synthetic construct]	119.0	[0..2]	[139..108]
gi\|114660678 - gi\|114660678\|ref\|XP_510781.2\| PREDICTED: DnaJ (Hsp40) homolog, subfamily A, member 3 [Pan troglodyte...	119.0	[0..2]	[139..108]
DNAJ_MYCPN - Chaperone protein DnaJ OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=dnaJ PE=3 SV=1 DNAJ_MYCPN - Chaperone protein dnaJ OS=Mycoplasma pneumoniae GN=dnaJ PE=3 SV=1	113.0	[0..3]	[105..23]
gi\|73959037 - gi\|73959037\|ref\|XP_851751.1\| PREDICTED: similar to DnaJ homolog subfamily A member 3, mitochondrial ...	113.0	[0..2]	[139..108]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFFVKFHQL QSKLHPDKFV MATDEEKKLS EEHSRKLNEA YKELADPFKR AKYLIKEYGE  60
   61 EHPENLQNSE ILMEMLERNE EIDEMHDENA LKAEKSRIET EIDEQLEQLG THFESKKIPE 120
  121 ARDVIGRLTY LYSLKNTVNT KLGLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.045757
Match:	1fpoA
Description:	HSC20 (HSCB), N-terminal (J) domain; HSC20 (HSCB), C-terminal oligomerisation domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits