YRC Public Data Repository - Protein Structure Prediction

Protein:	tza-2
Organism:	Caenorhabditis elegans
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tza-2.

Description	E-value	Query Range	Subject Range
gi\|187030578, gi... - gi\|39582694\|emb\|CAE65900.1\| Hypothetical protein CBG11067 [Caenorhabditis briggsae], gi\|187030578\|em...	297.0	[0..1]	[225..1]
B9D1_RAT - B9 domain-containing protein 1 OS=Rattus norvegicus GN=B9d1 PE=2 SV=1	278.0	[0..4]	[197..6]
B9D1_MOUSE - B9 domain-containing protein 1 OS=Mus musculus GN=B9d1 PE=1 SV=1	277.0	[0..4]	[197..6]
gi\|76644175, gi\|... - gi\|76644175\|ref\|XP_581610.2\| PREDICTED: similar to B9 [Bos taurus], gi\|194675998\|ref\|XP_001790645.1\|...	268.0	[0..3]	[196..5]
gi\|109113603 - gi\|109113603\|ref\|XP_001100199.1\| PREDICTED: similar to B9 protein isoform 3 [Macaca mulatta]	266.0	[0..4]	[196..6]
B9D1 - B9 protein domain 1 gi\|114668726 - gi\|114668726\|ref\|XP_001153772.1\| PREDICTED: B9 protein isoform 7 [Pan troglodytes]	266.0	[0..4]	[196..6]
gi\|73956168 - gi\|73956168\|ref\|XP_536657.2\| PREDICTED: similar to B9 protein [Canis familiaris]	263.0	[0..4]	[196..225]
tectonic-PA - The gene tectonic is referred to in FlyBase by the symbol Dmel\tectonic (CG9227, FBgn0031783). It is...	249.0	[0..10]	[205..5]
B9D1_DANRE - B9 domain-containing protein 1 OS=Danio rerio GN=b9d1 PE=2 SV=1	245.0	[0..4]	[183..6]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKADSIVLT IHGNVRTTEF PEESNVCVKL STVATGDWKI INGETVSLSS FSFRGADNQI  60
   61 FIDLPFECGL KGSSPFMWPR LVLNCFSKDH SGKDCVTGYG MLPIPTEPGK HVCRVHCFLP 120
  121 EPSSTVQQLI AKLRRVNAEF VDPMLPA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.055517
Match:	PF07162.2
Description:	No description for PF07162.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NADGRYACRT STKGYVDLEI NVSIKCSDTA YKFTSTSTEI KSSNSHATNN VSTTIADLAG  60
   61 IEAVGNEETF NAQEDNDEES KR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.602	0.770	protein binding	d.19.1	MHC antigen-recognition domain
View	Download	0.591	N/A	N/A	d.19.1	MHC antigen-recognition domain
View	Download	0.569	N/A	N/A	d.54.1	Enolase N-terminal domain-like
View	Download	0.554	N/A	N/A	d.19.1	MHC antigen-recognition domain
View	Download	0.540	N/A	N/A	d.19.1	MHC antigen-recognition domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits