YRC Public Data Repository - Protein Structure Prediction

Protein:	taf-10
Organism:	Caenorhabditis elegans
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf-10.

Description	E-value	Query Range	Subject Range
taf-10 - status:Confirmed UniProt:Q95ZS0 protein_id:AAK82906.1	229.0	[0..1]	[176..1]
gi\|157760471 - gi\|157760471\|ref\|XP_001672578.1\| Hypothetical protein CBG08794 [Caenorhabditis briggsae AF16] gi\|39582220, gi\|... - gi\|39582220\|emb\|CAE64171.1\| Hypothetical protein CBG08794 [Caenorhabditis briggsae], gi\|187032308\|em...	208.0	[0..5]	[175..1]
gi\|76635972, gi\|... - gi\|76635972\|ref\|XP_884376.1\| PREDICTED: similar to TAF10 RNA polymerase II, TATA box binding protein...	186.0	[0..24]	[176..72]
gi\|109107478 - gi\|109107478\|ref\|XP_001109152.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit...	186.0	[0..18]	[176..110]
gi\|61363275, gi\|... - gi\|61363578\|gb\|AAX42413.1\| TAF10 RNA polymerase II TATA box binding protein-associated factor [synth... TAF10 - TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa	185.0	[0..24]	[176..72]
gi\|73988324 - gi\|73988324\|ref\|XP_863143.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit 10 ...	185.0	[0..48]	[176..8]
gi\|220942412, gi... - gi\|220952646\|gb\|ACL88866.1\| Taf10-PA [synthetic construct], gi\|220942412\|gb\|ACL83749.1\| Taf10-PA [sy... Taf10-PA - The gene TBP-associated factor 10 is referred to in FlyBase by the symbol Dmel\Taf10 (CG2859, FBgn00...	180.0	[0..29]	[175..12]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDPEQYEPS SSTESVLMPP PALPQRPAAA PQVYSTLEPS VQNLRSSLHK PLTGNQQQFV  60
   61 QKTLENVQKN PSQDDTHEFI NQLADYPPTI PDSVTLHFLK SAGVDGSDPR VTRMISLAAQ 120
  121 KHVSDIILDA MTSARMKGLG QTKKGTKDTK YTLTEELLDE ILKEYGHQNT RPPYHT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.27
Match:	1f1eA
Description:	Archaeal histone
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.37193420606584	bayes_pls_golite062009
DNA binding	0.400531218539453	bayes_pls_golite062009
protein binding	0.32342954268389	bayes_pls_golite062009
nucleic acid binding	0.245546411181381	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: