YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07272
Organism:	Caenorhabditis elegans
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07272.

Description	E-value	Query Range	Subject Range
gi\|187027688, gi... - gi\|39597682\|emb\|CAE68373.1\| Hypothetical protein CBG14129 [Caenorhabditis briggsae], gi\|187027688\|em... gi\|157769063 - gi\|157769063\|ref\|XP_001676352.1\| Hypothetical protein CBG14129 [Caenorhabditis briggsae AF16]	654.0	[0..1]	[345..1]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKIAEGFG NNGELCEYHY SFVQDGKLTL VGRKYVAQPN HNWGHRVAFA GTYVLTFDKE  60
   61 SNKWERHDFP ELVSEENSEE VLFVRDNQLY LLAFVNFGAI GFQKLFRWDS NSFNEVLLNA 120
  121 PETKTLTETQ RFEVIAAAGT SSNGETILLL KDDNCHIQIY SLTVNGASST VENISQIHSD 180
  181 DNHLVTKIVQ EFYNIKNCFQ RGSPVIAETV NDKVLISYAV HGCGFNWEKT RFFVFDLKSK 240
  241 TARHVDIEGE YSSLPQYGFV G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [262-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNCSFVDKKT NSFIVAGGRV QKGMTGSAFY GAVWALKGNI FDDKSTLEWV QLPQTVEEGE  60
   61 HIFDGSTLYT VNKAAVSKVQ LDSI