YRC Public Data Repository - Protein Structure Prediction

Protein:	ech-3
Organism:	Caenorhabditis elegans
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ech-3.

Description	E-value	Query Range	Subject Range
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	277.0	[0..3]	[255..2]
gi\|15920248, gi\|... - gi\|15920248\|ref\|NP_375917.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus tokodaii str. 7], gi\|156...	272.0	[0..6]	[256..399]
gi\|28204455, gi\|... - gi\|28212012\|ref\|NP_782956.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium tetani E88], gi\|28204455\|...	271.0	[0..3]	[252..2]
gi\|1903327 - gi\|1903327\|emb\|CAB07495.1\| crotonase [Thermoanaerobacterium thermosaccharolyticum] gi\|1903327\|emb\|C... - crotonase [Thermoanaerobacterium thermosaccharolyticum]	270.0	[0..3]	[257..2]
gi\|70606884, gi\|... - gi\|70606884\|ref\|YP_255754.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus acidocaldarius DSM 639],...	270.0	[0..3]	[256..407]
gi\|241218800, gi... - gi\|241769557\|ref\|ZP_04766976.1\| Enoyl-CoA hydratase/isomerase [Sulfolobus solfataricus 98/2], gi\|241... gi\|25291790 - pir\|\|A90436 enoyl CoA hydratase (paaF-7) [imported] - Sulfolobus solfataricus gi\|13815932, gi\|... - gi\|15899349\|ref\|NP_343954.1\| enoyl CoA hydratase (paaF-7) [Sulfolobus solfataricus P2], gi\|13815932\|...	270.0	[0..4]	[255..9]
gi\|88926146, gi\|... - gi\|88944140\|ref\|ZP_01147473.1\| putative crotonase [Desulfotomaculum reducens MI-1], gi\|88926146\|gb\|E...	265.0	[0..3]	[255..2]
gi\|7428375 - pir\|\|C69370 probable enoyl-CoA hydratase (EC 4.2.1.17) fad-3 - Archaeoglobus fulgidus gi\|2649635, gi\|1... - gi\|2649635\|gb\|AAB90280.1\| enoyl-CoA hydratase (fad-3) [Archaeoglobus fulgidus DSM 4304], gi\|11498568...	265.0	[0..7]	[257..4]

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Predicted Domain #1

Region A:
Residues: [1-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNQFVKTR QDGPVFLIGI NRANKKNCVN HATALQLIDA FEKFNEDSTM KTAVLYGEGG  60
   61 TFCAGYDLES VSKAEHQEVS EDFCDKYRYM GPSIMKIKKP LIAAIEGFAV AGGLELSLMA 120
  121 DLRVSSPSAK FGVFCRRVGV PLIDGGTVRL PRVIGLGRAL DMILTGREVG AQEALQWGLV 180
  181 NRISDEGKAV EEAVKLGKLI ASHPEICMLA DRESTYYSLE HTEHESFEYE FGSTKVLAES 240
  241 IKGAQQFMEK QKNKKSKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits