YRC Public Data Repository - Protein Structure Prediction

Protein:	msra-1
Organism:	Caenorhabditis elegans
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for msra-1.

Description	E-value	Query Range	Subject Range
gi\|39582354, gi\|... - gi\|39582354\|emb\|CAE67603.1\| Hypothetical protein CBG13148 [Caenorhabditis briggsae], gi\|187028960\|em...	288.0	[0..1]	[207..1]
gi\|58393556, gi\|... - gi\|58393556\|ref\|XP_320164.2\| ENSANGP00000011685 [Anopheles gambiae str. PEST], gi\|55234261\|gb\|EAA001...	267.0	[0..5]	[197..10]
gi\|108884083, gi... - gi\|157107476\|ref\|XP_001649797.1\| methionine sulfoxide reductase [Aedes aegypti], gi\|108884083\|gb\|EAT...	253.0	[0..5]	[196..29]
Eip71CD-PA - The gene Ecdysone-induced protein 28/29kD is referred to in FlyBase by the symbol Dmel\Eip71CD (CG72...	246.0	[0..6]	[191..41]
gi\|48100580 - gi\|48100580\|ref\|XP_392623.1\| PREDICTED: similar to Ecdysone-induced protein 28/29kD CG7266-PA, isofo... gi\|33089114 - gi\|33089114\|gb\|AAP93586.1\| methionine sulfoxide reductase [Apis mellifera ligustica]	244.0	[0..5]	[197..11]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYLERAYFG LQCFWGESAW AKLKGVVVTR VGYAGGKQPN PTYKNIKDHT EITEITFDPK  60
   61 VIEYSKLTNF FWKHHNPAER RKKQYQSAIL YVNDDQKKVA EETLKVAKDK HGDIETYIEP 120
  121 LDKFYQAEDY HQKYWFRQKK ILFDELSLLD TQVAEGELAT KLNAYCAGFQ DFHDLERLAK 180
  181 EYGLKDSFVN KVKDYALSGG DPRNCHA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.221849
Match:	1nwaA
Description:	Peptide methionine sulfoxide reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	7.33214277590189	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	7.05871760837663	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	4.45221508174489	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.21670366786992	bayes_pls_golite062009
oxidoreductase activity	1.10659465297393	bayes_pls_golite062009
protein binding	0.370301035521826	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: