YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7503288
Organism:	Caenorhabditis elegans
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7503288.

Description	E-value	Query Range	Subject Range
gi\|74005297, gi\|... - gi\|74005299\|ref\|XP_545625.2\| PREDICTED: similar to microtubule-associated protein 2 isoform 3 isofor...	244.0	[0..2]	[170..1637]
gi\|109100794 - gi\|109100794\|ref\|XP_001109205.1\| PREDICTED: similar to Microtubule-associated protein 2 (MAP 2) (MAP...	243.0	[0..2]	[170..1633]
gi\|114583022 - gi\|114583022\|ref\|XP_001144404.1\| PREDICTED: microtubule-associated protein 2 isoform 5 [Pan troglody...	242.0	[0..2]	[170..1641]
gi\|76610286 - gi\|76610286\|ref\|XP_870834.1\| PREDICTED: similar to microtubule-associated protein 2 isoform 3 isofor...	242.0	[0..2]	[170..1650]
MTAP2_RAT - Microtubule-associated protein 2 OS=Rattus norvegicus GN=Map2 PE=1 SV=3	240.0	[0..2]	[170..1644]
gi\|14388361 - gi\|14388361\|dbj\|BAB60738.1\| hypothetical protein [Macaca fascicularis]	239.0	[0..1]	[169..608]
ptl-1 - status:Confirmed UniProt:O02592 protein_id:AAK70645.1	235.0	[0..1]	[196..258]
gi\|87578255, gi\|... - gi\|87578255\|ref\|NP_114035.2\| microtubule-associated protein 2 isoform 4 [Homo sapiens], gi\|119590862...	231.0	[0..2]	[170..285]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRERSDVQK STSTRSIDNV GRMTPKVNAK FVNVKSKVGS VTNHKAGGGN VEIFSEKRLY  60
   61 NAQSKVGSLK NATHVAGGGN VQIENRKLDF SAASPKVGSK TNYQPAKSDV KIVSEKLTWQ 120
  121 AKSKVGSMDN AAHKPAGGNV QILSQKLNWK AESKVGSKDN MNHRPGGGNV QVRNKLGYTH 180
  181 NITLFFRFST KKSATCRRTR AGIILRWTSA RYDRTTLSLE FYHTSLIFRG FVFFQQTDDL 240
  241 FL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits