YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07190
Organism:	Caenorhabditis elegans
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07190.

Description	E-value	Query Range	Subject Range
TPPC4_MOUSE - Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1	302.0	[0..3]	[217..1]
gi\|71051670, gi\|... - gi\|71051670\|gb\|AAH98628.1\| Trafficking protein particle complex 4 [Rattus norvegicus], gi\|62653423\|r... tr\|G3I977\|G3I977... - Trafficking protein particle complex subunit 4 OS=Cricetulus griseus GN=H671_4g12993 PE=4 SV=1	300.0	[0..3]	[217..1]
gi\|55637071 - gi\|55637071\|ref\|XP_508802.1\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S... TPPC4_PONPY - Trafficking protein particle complex subunit 4 - Pongo pygmaeus (Orangutan) TPPC4_PONAB - Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1 TRAPPC4 - trafficking protein particle complex 4	296.0	[0..3]	[217..1]
tr\|M3VW28\|M3VW28... - Trafficking protein particle complex 4 OS=Felis catus GN=TRAPPC4 PE=4 SV=1 gi\|149716953 - gi\|149716953\|ref\|XP_001503119.1\| PREDICTED: similar to Trafficking protein particle complex 4 [Equus... TPPC4_BOVIN - Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1	296.0	[0..3]	[217..1]
gi\|73954670 - gi\|73954670\|ref\|XP_536548.2\| PREDICTED: similar to Trafficking protein particle complex subunit 4 (S...	291.0	[0..3]	[217..1]
gi\|37748039, gi\|... - gi\|41152142\|ref\|NP_957058.1\| trafficking protein particle complex 4 [Danio rerio], gi\|37748039\|gb\|AA...	286.0	[0..3]	[217..1]
gi\|77748155, gi\|... - gi\|77748155\|gb\|AAI06501.1\| MGC131237 protein [Xenopus laevis], gi\|148223700\|ref\|NP_001090112.1\| hypo...	285.0	[0..3]	[217..1]
gi\|47215797 - gi\|47215797\|emb\|CAG02851.1\| unnamed protein product [Tetraodon nigroviridis]	279.0	[0..3]	[217..1]
gi\|53136776, gi\|... - gi\|57530486\|ref\|NP_001006320.1\| trafficking protein particle complex 4 [Gallus gallus], gi\|53136776\|...	279.0	[0..3]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNHIQHLFI INRAGSLIYS WEARTETPEV EKTYEWPIDV HLEEVDQKAV VVFGEKDGIK  60
   61 LRYYVKSVNG ETVSGTRLQL GAQQVNVLEY LQEEDHYPVT VKFAAPTVST NEKIILSSMF 120
  121 HSLFTIAVQL SPCQKSSGVE VLETTQFKLF CLQSRTGVKF VVITSAASNI AADSLLSKMY 180
  181 ELYTDFALKN PFYSIDMPIR AQKFDEAIKT LLERAEKNNG AVTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.522879
Match:	2j3tD
Description:	No description for 2j3tD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits