YRC Public Data Repository - Protein Structure Prediction

Protein:	CE07167
Organism:	Caenorhabditis elegans
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07167.

Description	E-value	Query Range	Subject Range
gi\|157750340 - gi\|157750340\|ref\|XP_001678883.1\| Hypothetical protein CBG11156 [Caenorhabditis briggsae AF16] gi\|187030494, gi... - gi\|39590234\|emb\|CAE65972.1\| Hypothetical protein CBG11156 [Caenorhabditis briggsae], gi\|187030494\|em...	170.0	[0..1]	[162..1]
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	168.0	[0..1]	[162..39]
Ctr1C-PB - The gene Copper transporter 1C is referred to in FlyBase by the symbol Dmel\Ctr1C (CG15551, FBgn0062...	161.0	[0..1]	[162..61]
gi\|28201980, gi\|... - gi\|28201980\|ref\|NP_780299.1\| solute carrier family 31, member 1 [Mus musculus], gi\|26338440\|dbj\|BAC3...	160.0	[0..1]	[162..47]
gi\|57094253 - gi\|57094253\|ref\|XP_538800.1\| PREDICTED: similar to High-affinity copper uptake protein 1 (hCTR1) (Co...	159.0	[0..1]	[162..95]
gi\|47575788, gi\|... - gi\|89273850\|emb\|CAJ83621.1\| solute carrier family 31 (copper transporters), member 1 [Xenopus tropic...	159.0	[0..2]	[162..35]
COPT1_RAT - High affinity copper uptake protein 1 OS=Rattus norvegicus GN=Slc31a1 PE=2 SV=1	158.0	[0..1]	[162..38]
gi\|125982976, gi... - gi\|54643567\|gb\|EAL32310.1\| GA17816-PA [Drosophila pseudoobscura], gi\|125982976\|ref\|XP_001355253.1\| G...	158.0	[0..2]	[162..67]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMDMTLHFG EREKILFSWW KTGSLSGMAV SMLITFLLCI LYEAIKSFRY FLAVWNNQKR  60
   61 QQRHAEASIT NPQNSGGDNI SEDSIHIAPL VQLSGFTKRL FTSYRLAQGA LYGLQALLAY 120
  121 TLMLIAMTYN MNLILSIVVG EAVGYFLFTG NPLVEQHLTD CC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.657577
Match:	PF04145.6
Description:	No description for PF04145.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits