YRC Public Data Repository - Protein Structure Prediction

Protein:	col-140
Organism:	Caenorhabditis elegans
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-140.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	236.0	[0..25]	[288..1372]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	200.0	[0..41]	[288..344]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	185.0	[0..41]	[288..1911]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	165.0	[0..32]	[287..265]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	162.0	[0..43]	[285..867]
h0016774 - null COL6A2 - collagen, type VI, alpha 2	157.0	[0..34]	[289..271]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	154.0	[0..27]	[286..243]
COHA1_CANLF - Collagen alpha-1(XVII) chain OS=Canis lupus familiaris GN=COL17A1 PE=2 SV=2	148.0	[0..33]	[274..557]
gi\|52842850, gi\|... - gi\|52842850\|ref\|YP_096649.1\| hypothetical protein lpg2644 [Legionella pneumophila subsp. pneumophila...	145.0	[0..36]	[288..56]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLILVGSS IALTCCLVTV FTMGSLLQEI SDMKMEVEDG MMEFREIHQD TWNRVVRKHI  60
   61 NPTGETDAPP NFQTLFGIRR SRQSGFPEQC NCGPRSEGCP PGPPGTPGEQ GPQGESGPDG 120
  121 DDGKPGLAGE VVAIVHDLPG GCIQCPPGRP GPRGPPGEVG PAGPSGDNGR KGPPGPPGGP 180
  181 GGPGEGGDGG RPGNPGRPGP AGPRGEPGTE YKPGQPGRPG PPGPRGEAGP AGQPGSPGND 240
  241 GESGKPGNAG RPGPPGAPGK NGTPGVRGED AAPGPDAGYC PCPARAYKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits