YRC Public Data Repository - Protein Structure Prediction

Protein:	his-44
Organism:	Caenorhabditis elegans
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for his-44.

Description	E-value	Query Range	Subject Range
gi\|187036007, gi... - gi\|39595176\|emb\|CAE60213.1\| Hypothetical protein CBG03777 [Caenorhabditis briggsae], gi\|187036007\|em... gi\|157745709 - gi\|157745709\|ref\|XP_001667951.1\| Hypothetical protein CBG03777 [Caenorhabditis briggsae AF16]	210.0	[0..2]	[122..3]
gi\|76656039 - gi\|76656039\|ref\|XP_593475.2\| PREDICTED: similar to rCG23123 [Bos taurus]	200.0	[0..5]	[122..225]
gi\|50728600 - gi\|50728600\|ref\|XP_416197.1\| PREDICTED: similar to H2B histone family, member F [Gallus gallus]	198.0	[0..2]	[122..73]
gi\|68441485 - gi\|68441485\|ref\|XP_692027.1\| PREDICTED: similar to histone 2, H2, like [Danio rerio]	194.0	[0..2]	[122..30]
gi\|109016350 - gi\|109016350\|ref\|XP_001104697.1\| PREDICTED: similar to Histone H2B 291B [Macaca mulatta]	193.0	[0..2]	[122..69]
gi\|74012717 - gi\|74012717\|ref\|XP_545431.2\| PREDICTED: similar to Histone H2B 291B, partial [Canis familiaris]	192.0	[0..2]	[117..4]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKPSAKGA KKAAKTVTKP KDGKKRRHAR KESYSVYIYR VLKQVHPDTG VSSKAMSIMN  60
   61 SFVNDVFERI AAEASRLAHY NKRSTISSRE IQTAVRLILP GELAKHAVSE GTKAVTKYTS 120
  121 SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.154902
Match:	2cv5D
Description:	Crystal structure of human nucleosome core particle
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits