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View Structure Prediction Details

Protein: col-116
Organism: Caenorhabditis elegans
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-116.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
251.0 [0..50] [313..1396]

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Predicted Domain #1
Region A:
Residues: [1-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRLATFIIV ISAVSIFGAL CVAASILVGI NEFHTIVSED LRDFKGYFGN AWKTMHVSEG  60
   61 NPLRILARRD ASKMARERKQ AGYEFDGGAS VEAHIQQCNC APATSHCPPG PPGIFGPPGE 120
  121 DGTPGEPGLD GDPGTTATRQ MAMDYTGGSE CVKCPAGPPG APGPNGPPGY EGQMGVPGLP 180
  181 GDGPTPGSPG PPGPPGPPGY PGRQGCQGKD GPSGDPGLRF IKTPGPVGAA GPPGPPGPPG 240
  241 SPGENTEGAP GLDGPLGPPG KPGTPGTDGA PGVFGDDGVP GQDAQYCQCP PRTPIGSADA 300
  301 DSEDNGGYFF FKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.69897
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle