YRC Public Data Repository - Protein Structure Prediction

Protein:	aps-2
Organism:	Caenorhabditis elegans
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aps-2.

Description	E-value	Query Range	Subject Range
gi\|74007149 - gi\|74007149\|ref\|XP_854230.1\| PREDICTED: similar to Adapter-related protein complex 1 sigma 1B subuni...	182.0	[0..2]	[142..190]
gi\|89042891 - gi\|89042891\|ref\|XP_944818.1\| PREDICTED: similar to adaptor-related protein complex 1 sigma 2 subunit...	172.0	[0..2]	[142..48]
gi\|38109895, gi\|... - gi\|39951407\|ref\|XP_363420.1\| hypothetical protein MG01346.4 [Magnaporthe grisea 70-15], gb\|EAA55695....	171.0	[0..2]	[142..3]
gi\|76610718 - gi\|76610718\|ref\|XP_612669.2\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3 iso...	165.0	[0..1]	[142..37]
gi\|109101341 - gi\|109101341\|ref\|XP_001098858.1\| PREDICTED: similar to adaptor-related protein complex AP-1, sigma 3...	164.0	[0..1]	[142..75]
gi\|42554497, gi\|... - gi\|46130854\|ref\|XP_389158.1\| hypothetical protein FG08982.1 [Gibberella zeae PH-1], gi\|42554497\|gb\|E...	164.0	[0..1]	[141..1]
gi\|114600917 - gi\|114600917\|ref\|XP_001138231.1\| PREDICTED: similar to DC22, partial [Pan troglodytes]	164.0	[0..2]	[142..39]
gi\|28949965 - gi\|28949965\|emb\|CAD70726.1\| probable clathrin assembly protein AP47 [Neurospora crassa]	164.0	[0..1]	[141..1]
gi\|78191071 - gi\|78191071\|gb\|ABB29860.1\| AP-1 mu subunit [Cryphonectria parasitica]	163.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRFILIQNR AGKTRLAKWY MHFDDDEKQK LIEEVHACVT VRDAKHTNFV EFRNFKIVYR  60
   61 RYAGLYFCIC VDITDNNLYY LEAIHNFVEV LNEYFHNVCE LDLVFNFYKV YTVVDEMFLA 120
  121 GEIRETSQTK VLKQLLMLTS LE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	1gw5S
Description:	Sigma2 adaptin (clathrin coat assembly protein AP17)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits