YRC Public Data Repository - Protein Structure Prediction

Protein:	sft-4
Organism:	Caenorhabditis elegans
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sft-4.

Description	E-value	Query Range	Subject Range
gi\|76671951 - gi\|76671951\|ref\|XP_604404.2\| PREDICTED: similar to SURF-4 [Bos taurus]	358.0	[0..6]	[277..84]
gi\|33086478 - gi\|33086478\|gb\|AAP92551.1\| Ab1-205 [Rattus norvegicus]	355.0	[0..9]	[277..2]
gi\|85113270 - gi\|85113270\|ref\|XP_964496.1\| hypothetical protein NCU03319 [Neurospora crassa OR74A] gi\|32420623, gi\|... - gi\|32420623\|ref\|XP_330755.1\| hypothetical protein [Neurospora crassa], gi\|28926280\|gb\|EAA35260.1\| hy...	346.0	[0..12]	[275..37]
gi\|145013229, gi... - gi\|39959108\|ref\|XP_364464.1\| hypothetical protein MGG_09309 [Magnaporthe grisea 70-15], gb\|EAA55502....	346.0	[0..12]	[275..37]
gi\|2440040 - gi\|2440040\|emb\|CAA75173.1\| SURF-4 protein [Caenorhabditis elegans]	345.0	[0..1]	[277..1]
gi\|157769913 - gi\|157769913\|ref\|XP_001676777.1\| Hypothetical protein CBG14749 [Caenorhabditis briggsae AF16] gi\|39598107, gi\|... - gi\|39598107\|emb\|CAE68799.1\| Hypothetical protein CBG14749 [Caenorhabditis briggsae], gi\|187028113\|em...	344.0	[0..1]	[277..1]
SURF4_MOUSE - Surfeit locus protein 4 OS=Mus musculus GN=Surf4 PE=1 SV=1 gi\|55250527 - gb\|AAH86249.1\| Unknown (protein for MGC:98765) [Xenopus laevis] gi\|76443685, gi\|... - gi\|76443685\|ref\|NP_001029040.1\| surfeit 4 [Rattus norvegicus], ref\|XP_216028.2\| similar to Surf-4 pr...	341.0	[0..9]	[277..2]
ENSPTRT00000039854 - null gi\|123997081, gi... - gi\|123997081\|gb\|ABM86142.1\| surfeit 4 [synthetic construct], gi\|123982418\|gb\|ABM82950.1\| surfeit 4 [... SURF4 - surfeit 4 SURF4_PONPY - Surfeit locus protein 4 - Pongo pygmaeus (Orangutan) SURF4_PONAB - Surfeit locus protein 4 OS=Pongo abelii GN=SURF4 PE=2 SV=1	341.0	[0..9]	[277..2]
gi\|66850178, gi\|... - gi\|70995576\|ref\|XP_752543.1\| COPII-coated vesicle protein SurF4/Erv29 [Aspergillus fumigatus Af293],... gi\|159131298 - gi\|159131298\|gb\|EDP56411.1\| COPII-coated vesicle protein SurF4/Erv29, putative [Aspergillus fumigatu...	340.0	[0..12]	[275..38]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQFRAPGGQ NEMLAKAEDA AEDFFRKTRT YLPHIARLCL VSTFLEDGIR MYFQWDDQKQ  60
   61 FMQESWSCGW FIATLFVIYN FFGQFIPVLM IMLRKKVLVA CGILASIVIL QTIAYHILWD 120
  121 LKFLARNIAV GGGLLLLLAE TQEEKASLFA GVPTMGDSNK P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSYMLLAGRV LLIFMFMSLM HFEMSFMQVL EIVVGFALIT LVSIGYKTKL SAIVLVIWLF  60
   61 GLNLWLNAWW TIPSDRFYRD FMKYDFFQTM SVIGGLLLVI AYGPGGVSVD DYKKRW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits