YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06928
Organism:	Caenorhabditis elegans
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06928.

Description	E-value	Query Range	Subject Range
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	203.0	[0..51]	[263..580]
gi\|50731660 - gi\|50731660\|ref\|XP_418312.1\| PREDICTED: similar to Snf7 homologue associated with Alix 3 [Gallus gal...	181.0	[0..48]	[265..233]
gi\|109493760 - gi\|109493760\|ref\|XP_001063932.1\| PREDICTED: similar to chromatin modifying protein 2B [Rattus norveg...	177.0	[0..51]	[259..247]
gi\|114620768 - gi\|114620768\|ref\|XP_528179.2\| PREDICTED: similar to Chromatin modifying protein 4C [Pan troglodytes]	167.0	[0..47]	[264..112]
vps-32.2 - status:Predicted UniProt:Q22916 protein_id:AAC25860.2	167.0	[0..49]	[265..1]
gi\|71008549, gi\|... - gi\|71008549\|ref\|XP_758224.1\| hypothetical protein UM02077.1 [Ustilago maydis 521], ref\|XP_399692.1\| ...	166.0	[0..4]	[264..227]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1	159.0	[0..52]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKFLLRGYL VEVMIYPLIV VSTCALFTSY NFFLSVLRIH CFIYFLQKMS LFSKFFGGMM  60
   61 QEAPITPQES IQKLRETEDI LEKKQEFLEK KIDDVRKQNA VKYGTKNKRM ALQCLSRKKA 120
  121 FEKQLIHIDG VLATLEHQRE TLENASTNAE VLTVMKLASD ALKAVHNNMD SDQVRDMMDN 180
  181 IDEQREVAKE IADAISNPGF NNAIDEADLL RELVDLEQEA LDKDLLDARA PPVTLPDTPN 240
  241 IALPASRPRA KEADKDLEDL ESWAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits