YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06925
Organism:	Caenorhabditis elegans
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06925.

Description	E-value	Query Range	Subject Range
gi\|94390429, gi\|... - gi\|94390429\|ref\|XP_980073.1\| PREDICTED: similar to Protein FAM18B [Mus musculus], gi\|149262150\|ref\|X...	292.0	[0..45]	[237..8]
gi\|109113403 - gi\|109113403\|ref\|XP_001084390.1\| PREDICTED: similar to Protein FAM18B [Macaca mulatta]	286.0	[0..40]	[232..3]
TV23B_PONAB - Golgi apparatus membrane protein TVP23 homolog B OS=Pongo abelii GN=TVP23B PE=2 SV=1 FA18B_PONPY - Protein FAM18B - Pongo pygmaeus (Orangutan)	286.0	[0..40]	[232..3]
gi\|114587678 - gi\|114587678\|ref\|XP_511818.2\| PREDICTED: hypothetical protein [Pan troglodytes]	285.0	[0..40]	[232..3]
gi\|73956070 - gi\|73956070\|ref\|XP_546636.2\| PREDICTED: similar to RIKEN cDNA 1810036I24 [Canis familiaris]	285.0	[0..40]	[232..3]
gi\|14250060, gi\|... - gi\|148747574\|ref\|NP_057162.4\| hypothetical protein LOC51030 [Homo sapiens], gi\|14250060\|gb\|AAH08430....	284.0	[0..40]	[232..3]
gi\|205277356, gi... - gi\|205277356\|ref\|NP_001101038.2\| hypothetical protein LOC687358 [Rattus norvegicus], gi\|149052915\|gb...	283.0	[0..45]	[232..8]

Back

Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTKAKISGA FPREKYGMQV RNRRKVCKQH TSRANSSTFP TKMSGFENDI SIGATMTQSQ  60
   61 TSQGFSLQMF GKPTIVLAHL SFKGAALFFY FFANFFTNSF IVQFLVILTL LSMDFWTVKN 120
  121 ITGRLLVGLR WWNFVDADGN NHWKFESAKD MTRFATIDRR VFWLGLVVGP AAWIFFVVTA 180
  181 FLTLKFEWMI VALLGALMNM ANLWGYLRCR WNNTEQMTSY FQKWAFLNVL RRAQQPPQEY 240
  241 QNPVFSA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	99.356547
Match:	PF05832.3
Description:	No description for PF05832.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits