YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06835
Organism:	Caenorhabditis elegans
Length:	478 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06835.

Description	E-value	Query Range	Subject Range
gi\|218900136, gi... - gi\|218900136\|ref\|YP_002448547.1\| cysteine desulfurase SufS [Bacillus cereus G9842], gi\|218542809\|gb\|... gi\|228910821, gi... - gi\|228910821\|ref\|ZP_04074630.1\| cysteine desulfurase [Bacillus thuringiensis IBL 200], gi\|228848772\|... gi\|228856171, gi... - gi\|228903486\|ref\|ZP_04067611.1\| cysteine desulfurase [Bacillus thuringiensis IBL 4222], gi\|228856171... gi\|228961227, gi... - gi\|228961227\|ref\|ZP_04122847.1\| cysteine desulfurase [Bacillus thuringiensis serovar pakistani str. ... gi\|218233850, gi... - gi\|218233850\|ref\|YP_002369783.1\| cysteine desulfurase SufS [Bacillus cereus B4264], gi\|218161807\|gb\|... gi\|228817483, gi... - gi\|228942149\|ref\|ZP_04104689.1\| cysteine desulfurase [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228784599, gi... - gi\|228975078\|ref\|ZP_04135637.1\| cysteine desulfurase [Bacillus thuringiensis serovar thuringiensis s... gi\|228968099, gi... - gi\|228968099\|ref\|ZP_04129104.1\| cysteine desulfurase [Bacillus thuringiensis serovar sotto str. T040... gi\|229032620, gi... - gi\|229032620\|ref\|ZP_04188584.1\| cysteine desulfurase [Bacillus cereus AH1271], gi\|228728705\|gb\|EEL79... gi\|228981718, gi... - gi\|228981718\|ref\|ZP_04142013.1\| cysteine desulfurase [Bacillus thuringiensis Bt407], gi\|228777830\|gb... gi\|229112426, gi... - gi\|229112426\|ref\|ZP_04241964.1\| cysteine desulfurase [Bacillus cereus Rock1-15], gi\|228671074\|gb\|EEL... gi\|229049673, gi... - gi\|229049673\|ref\|ZP_04194230.1\| cysteine desulfurase [Bacillus cereus AH676], gi\|228722586\|gb\|EEL739... gi\|74491798, gi\|... - gi\|75760714\|ref\|ZP_00740738.1\| Cysteine desulfurase / Selenocysteine lyase [Bacillus thuringiensis ... gi\|228630272, gi... - gi\|229153173\|ref\|ZP_04281352.1\| cysteine desulfurase [Bacillus cereus m1550], gi\|228630272\|gb\|EEK869... gi\|30023021, gi\|... - gi\|30023021\|ref\|NP_834652.1\| cysteine desulfhydrase [Bacillus cereus ATCC 14579], gi\|29898581\|gb\|AAP... gi\|229130239, gi... - gi\|229130239\|ref\|ZP_04259198.1\| cysteine desulfurase [Bacillus cereus BDRD-Cer4], gi\|228653172\|gb\|EE... gi\|228619580, gi... - gi\|229163959\|ref\|ZP_04291899.1\| cysteine desulfurase [Bacillus cereus R309803], gi\|228619580\|gb\|EEK7...	338.0	[0..52]	[473..3]

Back

Predicted Domain #1

Region A:
Residues: [1-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDAPPQPEN EQECMCTQDK VLQFLNKMAD ESGIKDLTDP ALAEFLSDSD ALKEIRDLFH  60
   61 YPKAGTLPDA DPSLVDPESD SIYLCGNSLG LMPKATGEVM KDHLDKWAKM GVFGHMSGEV 120
  121 PWAHCDEYCL EGVGRLVGAK KEEVSVCNSL TVNIHVLLTS FYKPTETRHK ILLESKAFPS 180
  181 DHYAIESQIR LKGRTVQDSM VCLEPREGEE TLRTEDILDY IEKNGDEIAI VFFSGIQYYT 240
  241 GQLFDMRAIT EAGHRKGCFV GFDLAHAFAN VPLHLHWWDV DFACWCSYKY GCTGAGSIGG 300
  301 LFVHERFLND QRERMLGWWS HKMSSRFVMD NVLDLDEGAA GYRISNPPIH TVAAMLGSLK 360
  361 VFDQVSLENL RSRSCYLTGY LEYLVKTLFG ENSEQRTTKL SISIITPEEF HQRGCQLSLK 420
  421 FSSPIDIIYP ELVKRGCAVD KRYPNVIRVA PVHLYNNYVD IRRFISVLQE VAHIVESE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.0
Match:	2hzpA
Description:	No description for 2hzpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits