YRC Public Data Repository - Protein Structure Prediction

Protein:	col-10
Organism:	Caenorhabditis elegans
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-10.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	236.0	[0..29]	[293..1393]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	195.0	[0..38]	[293..346]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	184.0	[0..29]	[294..1877]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	170.0	[0..37]	[294..266]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	165.0	[0..1]	[286..769]
h0016774 - null COL6A2 - collagen, type VI, alpha 2	162.0	[0..31]	[293..231]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	160.0	[0..31]	[293..246]
gi\|157763364 - gi\|157763364\|ref\|XP_001674024.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae AF16] gi\|39593313, gi\|... - gi\|39593313\|emb\|CAE64783.1\| Hypothetical protein CBG09576 [Caenorhabditis briggsae], gi\|187031733\|em...	145.0	[0..2]	[287..4]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKFLVTLST GAASIAVLAV LFTVPSLYNT INEVHDEVLD GVSVFRVETD SAWTEMMDIQ  60
   61 ITVTPPTKPR VNPFNSIFRQ KRQTFSGLPA WCQCEPTKPT CPPGPPGPPG QPGAPGTPGA 120
  121 PGPKGDDNTA TFAPLTCAPV SQDCVKCPEG PAGPAGPEGP AGPAGPDGQP GAPGNAGNPG 180
  181 SDGQPGAPGD NGQDGAPGQD GQPGAPGQDG QRGSGAPGGP GAPGNAGPAG PAGQDGAPGQ 240
  241 DGQPGPAGPA GQDGAPGNAG SDGQPGAPGG PGLPGNDAAY CACPPRSAVF VSRH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits