YRC Public Data Repository - Protein Structure Prediction

Protein:	CE06667
Organism:	Caenorhabditis elegans
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06667.

Description	E-value	Query Range	Subject Range
gi\|13359203 - gi\|13359203\|dbj\|BAB33335.1\| KIAA1665 protein [Homo sapiens]	193.0	[0..1]	[196..14]
gi\|91092914 - gi\|91092914\|ref\|XP_971430.1\| PREDICTED: similar to DNA-directed RNA polymerase III 25 kDa polypeptid...	189.0	[0..1]	[196..1]
gi\|109094365, gi... - gi\|109094365\|ref\|XP_001105322.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypepti... gi\|90077470 - gi\|90077470\|dbj\|BAE88415.1\| unnamed protein product [Macaca fascicularis]	186.0	[0..1]	[196..1]
RPC8_MOUSE - DNA-directed RNA polymerase III subunit RPC8 OS=Mus musculus GN=Polr3h PE=1 SV=2 gi\|149065819, gi... - gi\|27662966\|ref\|XP_216998.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H...	185.0	[0..1]	[196..1]
gi\|73968962 - gi\|73968962\|ref\|XP_849136.1\| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H...	183.0	[0..1]	[197..1]
RPC8_BOVIN - DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus GN=POLR3H PE=2 SV=1	182.0	[0..1]	[197..1]
gi\|125979739\|ref... - GA20275-PA [Drosophila pseudoobscura], GA20275 [Drosophila pseudoobscura pseudoobscura] gi\|125979739, gi... - gi\|54640887\|gb\|EAL29638.1\| GA20275 [Drosophila pseudoobscura pseudoobscura], gi\|125979739\|ref\|XP_001...	179.0	[0..1]	[213..1]
gi\|20904984, gi\|... - gi\|21226698\|ref\|NP_632620.1\| DNA-directed RNA polymerase subunit E' [Methanosarcina mazei Go1], gi\|2...	178.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFILSLLHDT VAIQPHQLSS DQQIVIKKRL NERLANKIIP DLGLCICVYD INEIGDSYIL  60
   61 PGEGDCRARV KFRMIVFRPF VDEVIEAKVI GSSRQGLCLT IQFFEDIFVP AEKLPEPHVF 120
  121 EEEGQVWYWE YAQEDGEPPA KLYMDPGKIV RFRVTEIIFK DLKPELTHEE RKTEKSMEIK 180
  181 GTMASTGLGC IGWWAAEDED DEAVEDEQDE QEEVIQPKEE IRQPQEEVRQ PVKIKEEPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.0
Match:	2ckzB
Description:	No description for 2ckzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits