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View Structure Prediction Details

Protein: lips-6
Organism: Caenorhabditis elegans
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-6.

Description E-value Query
Range
Subject
Range
gi|68368595 - gi|68368595|ref|XP_691116.1| PREDICTED: hypothetical protein [Danio rerio]
188.0 [0..65] [343..171]

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Predicted Domain #1
Region A:
Residues: [1-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWITVAVML VAVGFAACGH AVDPHFMQWM QKNLKPEEVK AFVRDELTTG SFGGGVVTTE  60
   61 THDRPVVFVH GLNNEAGSLW KIARDFTNAN YPRQYLFATT WGKGTEPLNL NVAMSCTHVQ 120
  121 HVRRFIETVL KYTGAQKIDV IGYSMGSPIA RKAILGGKCV DNPNVALGPS LHSRVHTYIS 180
  181 VAGANQGSQL CALPFFDICN MKTGLMCNSK FLEDINWFKN YEGSYKAFNL ASTADFVVGY 240
  241 MACGKKASEF TGAHEWKVEG RNHEQTEFDT AAIQLQMLRE STAGLSKSRP SAKLEKKKNN 300
  301 SFSEVKKYLR SKRRDAPQKV KKTVTKKVKR TAVTSAHKKH VNKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.0
Match: 1va4A
Description: Pseudomonas fluorescens aryl esterase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle