YRC Public Data Repository - Protein Structure Prediction

Protein:	her-1
Organism:	Caenorhabditis elegans
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for her-1.

Description	E-value	Query Range	Subject Range
gi\|157764700 - gi\|157764700\|ref\|XP_001674693.1\| Hypothetical protein CBG19345 [Caenorhabditis briggsae AF16] gi\|39594654, gi\|... - gi\|39594654\|emb\|CAE72232.1\| Hypothetical protein CBG19345 [Caenorhabditis briggsae], gi\|187024571\|em...	271.0	[0..2]	[170..3]
gi\|52695595, gi\|... - gi\|52695596\|pdb\|1SZH\|B Chain B, Crystal Structure Of C. Elegans Her-1, gi\|52695595\|pdb\|1SZH\|A Chain ...	246.0	[0..18]	[175..4]
gi\|2199570 - gi\|2199570\|gb\|AAB61377.1\| Her-1 [Brugia malayi]	239.0	[0..1]	[166..10]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYLPIFVFL GSFGYTETTL TKELIKDAAE KCCTRNRQEC CIEIMKFGTP IRCGYDRDPK  60
   61 LPGYVYKCLQ NVLFAKEPKK KINLDDSVCC SVFGNDQNDS GRRCENRCKN LMTSPSIDAA 120
  121 TRLDSIKSCS LLDNVLYKCF EKCRSLRKDG IKIEVLQFEE YCNATFIQKR TFRGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	1szhA
Description:	Crystal Structure of C. elegans HER-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits