YRC Public Data Repository - Protein Structure Prediction

Protein:	rbx-1
Organism:	Caenorhabditis elegans
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rbx-1.

Description	E-value	Query Range	Subject Range
gi\|157764694 - gi\|157764694\|ref\|XP_001674690.1\| Hypothetical protein CBG19342 [Caenorhabditis briggsae AF16] gi\|39594651, gi\|... - gi\|39594651\|emb\|CAE72229.1\| Hypothetical protein CBG19342 [Caenorhabditis briggsae], gi\|187024568\|em...	116.0	[0..1]	[110..1]
gi\|50728692 - gi\|50728692\|ref\|XP_416239.1\| PREDICTED: similar to RBX1 protein [Gallus gallus]	115.0	[0..13]	[110..262]
gi\|78394982 - gi\|78394982\|gb\|AAI07832.1\| Rbx1 protein [Danio rerio]	111.0	[0..1]	[110..12]
gi\|19067884, gi\|... - gi\|62869880\|gb\|AAY18085.1\| hyperosmotic protein 21 [Salmo salar], gi\|62869878\|gb\|AAY18084.1\| hyperos...	110.0	[0..1]	[110..82]
gi\|83701143 - gi\|83701143\|gb\|ABC41134.1\| RING-box protein [Arachis hypogaea]	109.0	[0..1]	[110..10]
gi\|112821040 - gi\|112821040\|gb\|ABI24165.1\| ring box protein 1 [Branchiostoma belcheri tsingtaunese] gi\|229296851, gi... - gi\|229296851\|gb\|EEN67490.1\| hypothetical protein BRAFLDRAFT_113519 [Branchiostoma floridae], gi\|2194...	109.0	[0..9]	[110..10]
gi\|51980558 - gb\|AAH82183.1\| Unknown (protein for MGC:98645) [Xenopus laevis] gi\|90075658, gi\|... - gi\|90075658\|dbj\|BAE87509.1\| unnamed protein product [Macaca fascicularis], gi\|84579139\|dbj\|BAE73003.... gi\|118082672 - gi\|118082672\|ref\|XP_416239.2\| PREDICTED: similar to RBX1 protein [Gallus gallus] CCDS14009.1_1 - null gi\|114686557 - gi\|114686557\|ref\|XP_515153.2\| PREDICTED: similar to RBX1 protein isoform 5 [Pan troglodytes] RBX1 - ring-box 1 gi\|126338707 - gi\|126338707\|ref\|XP_001363807.1\| PREDICTED: similar to RBX1 protein [Monodelphis domestica] RBX1_MOUSE - E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1 gi\|76617022, gi\|... - gi\|88682859\|gb\|AAI05330.1\| Ring-box 1 [Bos taurus], gi\|76617022\|ref\|XP_597082.2\| PREDICTED: similar ... gi\|109451460, gi... - gi\|109452056\|emb\|CAK54890.1\| RBX1 [synthetic construct], gi\|109451460\|emb\|CAK54591.1\| RBX1 [syntheti... HGNC:9928\|MIM:60... - 1 gi\|72679391, gi\|... - gi\|77628004\|ref\|NP_001029307.1\| ring-box 1 [Rattus norvegicus], gi\|72679391\|gb\|AAI00259.1\| Ring-box ... tr\|M3X867\|M3X867... - Ring-box 1 OS=Felis catus GN=RBX1 PE=4 SV=1 gi\|197127417 - gi\|197127417\|gb\|ACH43915.1\| putative RBX1 protein [Taeniopygia guttata] gi\|149743062 - gi\|149743062\|ref\|XP_001502369.1\| PREDICTED: similar to RING-box protein 1 (Rbx1) (Regulator of culli...	108.0	[0..13]	[110..11]
gi\|238503442, gi... - gi\|238503442\|ref\|XP_002382954.1\| ubiquitin ligase subunit HrtA, putative [Aspergillus flavus NRRL335... gi\|169765261 - gi\|169765261\|ref\|XP_001817102.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764956 - gi\|83764956\|dbj\|BAE55100.1\| unnamed protein product [Aspergillus oryzae]	108.0	[0..1]	[109..6]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQASDSTAM EVEEATNQTV KKRFEVKKWS AVALWAWDIQ VDNCAICRNH IMDLCIECQA  60
   61 NQAAGLKDEC TVAWGNCNHA FHFHCISRWL KTRQVCPLDN REWEFQKYGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.39794
Match:	1u6gB
Description:	Crystal Structure of The Cand1-Cul1-Roc1 Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits