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View Structure Prediction Details

Protein: col-123
Organism: Caenorhabditis elegans
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-123.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
327.0 [0..42] [357..1416]

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Predicted Domain #1
Region A:
Residues: [1-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSEFLYR MQVSSVTFVA SSLSAIALIS CLLVLSSVYR NVQDYWTELD DQMVEVRKDL  60
   61 DDMWREIMHI QSNSLGSVFR ARRPARGAYD EGDYKEAPPP TSYPSSGGYD EPSAPAHDTA 120
  121 PQAPAGPAPT SPDSCQCQAE NKCKAGPQGA KGAPGLPGPN GVPGLDGKPG LDSLDVEPQA 180
  181 QGTGTCFHCP QGPPGSPGPM GHPGARGMKG SDGQPGQPGK DGDPGKPGEM GPNGFQGKVG 240
  241 PDGFPGEKGG DGRRLIGRPG PKGQKGETGH PGAQGTPGHN GPTGPPGDAG PDGGPGPQGE 300
  301 QGADGGPGSE GKVGRPGRDA EYCHCPARGS HGGSSGGGGG GGGEYKATGG DSYRKKKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.221849
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle